Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00096 ATGGCTACAAGTGATGTCCCATGCTGTGAGCCAAGGTTCTGGATGTATCTCCTGATATGTGTGGGTTTGGTTGCTTTTGCTGGTCTTATGTCCGGCCTTACGCTAGGACTTATGTCGCTCAGTTTGGTCGATCTCGAGGTCCTTGCCAAGTCTGGCAGGCCCGACGACCGCAAAAATGCTGCCAAAATTCTGCCCATAGTAAAGAACCAGCATTTGCTTCTTTGCACGCTCCTCATAAGCAATGCCATGGCAATGGAGGCTCTGCCCATCTTCATCGATGCCCTTCTCCCAGCTTGGGGAGCCATTGTGATATCAGTCACTCTCATACTAACTTTCGGAGAGATTATTCCTCAAGCTATTTGCTCAAGGTATGGATTGAGCGTCGGCGCAAGGCTGTCGGTCATTGTTCGGGTGCTTCTCTTAGTCCTCTTTCCTTTGGCTTACCCCATCAGTAAGACATTAGATTGGCTTCTGGGCAAGGGGCATTCTACACTTCTAAGAAGGGCAGAGCTGAAGACATTTGTGGATATGCATGGGAACAAGGCAGGCAAAGGTGGAGAATTGACTCAAGAAGAAACCACCATAATCACTGGAGCTTTGGACATGACACTCAAAACTGCCAAGGATGCTATGACTCCTTTATCCAAATTGTTTTCACTTGATATAAATTCCAAACTTGATGAGAAAACCATGGAGATCATTTTAAGGAAAGGACATAGTCGAGTGCCGATCTACTCGGGACATCCAACTAATATCATCGGTATTATTTTGGTTAAAAATCTGATCAAATTTGATCCACAGGATGAAACTCCCATCAGAAATCTCACCATCAGAAAAGTTCCAAGGGTACACGAGAACTTACCTTTATATGACATATTGAACCAGTTCCAACAAGGACATAGTCATATGGCTGTTGTCATTAAGAGCCACAAGGAAGCCAGAGAGCCTGCAGATTCAAAAACTGTGGATTTTAACGAATCAGAACTCGAAACCACGACGAGAACTGAGACAGAGTTGGAATATATTAAGCTGCAGATAAGGAATATTCATTCTAATGTAAGTAGTGAGACAAATGAAAAATCAATGCCAGATTTTGATGAAGATGTTATTGGTATCATAACGCTGGAAGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGACGAATACGTTGCTGTTCATAACAAGCTGAAAGTGAATATGAGAGTAAGGAGATCAAAGTCAGAATCTCCAGGAGCAGCCCATCTGCGCTGGATATCACCAATGCCATCCCCACTATCTTCATACCATCACTCTCCACTTTCTTCATCGTATAATCACTCACCAATGCCTCCGCGTATTCACTCCCCATTTACTCCACCGCCTCTCTCTTCTTCCCTTGGAAATTACTTGCGCTCTTCTCCCACTCCATCTCCCGTTTCGCCTCATAAGGTTTCAAGGAAATCGTACGAGAAGCTGAAGCAGGCAGATGGATCATAG 1491 44.13 MATSDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLAKSGRPDDRKNAAKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGARLSVIVRVLLLVLFPLAYPISKTLDWLLGKGHSTLLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTAKDAMTPLSKLFSLDINSKLDEKTMEIILRKGHSRVPIYSGHPTNIIGIILVKNLIKFDPQDETPIRNLTIRKVPRVHENLPLYDILNQFQQGHSHMAVVIKSHKEAREPADSKTVDFNESELETTTRTETELEYIKLQIRNIHSNVSSETNEKSMPDFDEDVIGIITLEDVMEELLQEEILDETDEYVAVHNKLKVNMRVRRSKSESPGAAHLRWISPMPSPLSSYHHSPLSSSYNHSPMPPRIHSPFTPPPLSSSLGNYLRSSPTPSPVSPHKVSRKSYEKLKQADGS 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 430111 434131 + CmaCh16G000960.1 Cma16g00096 310694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00096 496 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Cma16g00096 496 MobiDBLite consensus disorder prediction 457 480 - -
Cma16g00096 496 Pfam Cyclin M transmembrane N-terminal domain 18 188 IPR002550 -
Cma16g00096 496 ProSiteProfiles CBS domain profile. 211 272 IPR000644 -
Cma16g00096 496 MobiDBLite consensus disorder prediction 482 496 - -
Cma16g00096 496 MobiDBLite consensus disorder prediction 433 496 - -
Cma16g00096 496 SUPERFAMILY CBS-domain pair 196 384 IPR046342 -
Cma16g00096 496 Gene3D - 192 322 IPR046342 -
Cma16g00096 496 Gene3D - 323 390 IPR046342 -
Cma16g00096 496 MobiDBLite consensus disorder prediction 433 447 - -
Cma16g00096 496 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Cma16g00096 496 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 490 IPR045095 GO:0010960
Cma16g00096 496 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00096 K16302 CNNM; metal transporter CNNM - csv:101210102 734.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01908 Cma-Chr1:12453841 Cma16g00096 Cma-Chr16:430111 1.31E-171 dispersed
Cma07g00628 Cma-Chr7:2725092 Cma16g00096 Cma-Chr16:430111 9.97E-138 dispersed
Cma16g00096 Cma-Chr16:430111 Cma17g00273 Cma-Chr17:1418758 1.10E-139 dispersed
Cma16g00096 Cma-Chr16:430111 Cma19g00517 Cma-Chr19:6055358 1.60E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00096 Cma_Chr16 FPKM 33.028515 34.655418 0.0 0.0 1.437774 1.72914 1.242158 0.0 0.0 0.0