Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00098 ATGGCGGACGTGCAGATGGCTGATGCTGAGACCTTCGCCTTCCAGGCCGAGATTAACCAGCTTCTCAGTTTGATTATCAATACTTTCTACAGCAACAAGGAGATTTTCCTTCGAGAGCTTATCAGCAACTCCTCTGACGCGTTGGACAAGATTCGATATGAGAGTTTGACTGATAAGAGCAAACTTGACGCTCAACCAGAGCTTTTCATCAGAATTGTTCCAGACAAGAACAACAAAACTCTCTCCATCATCGATAGTGGAGTCGGAATGACTAAAGCAGATCTGGTGAATAACTTGGGAACCATCGCAAGGTCGGGGACCAAAGAATTCATGGAGGCATTGCAGGCCGGTGCCGATGTCAGCATGATCGGCCAATTCGGTGTAGGGTTCTATTCGGCTTACCTTGTGGCCGAGAAGGTGATTGTGACCACAAAGCACAATGACGACGAGCAATACGTATGGGAATCGCAGGCCGGTGGTTCCTTCACTGTCACAAGGGACGTCAGTGGAGAGCAACTCGGGAGGGGTACCAAGATCACACTCTTCCTCAAGGAGGATCAGTTGGAGTATTTGGAAGAGAGAAGGATCAAGGACCTCGTGAAGAAGCACTCTGAGTTCATCAGCTATCCCATCTATCTGTGGACCGAGAAGACTACCGAGAAGGAGATCAGCGACGATGAGGAGGACGAACCTAAGAAGGAAGAAGAAGGAGACGTCGAAGAGGTGGACGAGGAGAAGGAGACCAAGTCAAAGAAGAAGAAGATCAAAGAGGTTTCTCACGAATGGCAACTCATCAACAAGCAGAAACCCATCTGGCTGCGCAAGCCTGAAGAGATCACCAGAGATGAGTATGCATCATTCTACAAGAGCTTGACAAACGACTGGGAGGAACACCTTGCAGTGAAACACTTCTCCGTGGAAGGACAGCTCGAGTTCAAAGCAATTCTCTTTGTCCCGAAGAGGGCTCCGTTTGATCTCTTCGACAGCCGTAAAAAACTGAACAACATAAAGCTCTATGTAAGAAGGGTGTTCATCATGGACAACTGTGAGGAGCTGATCCCCGAGTACCTTGGATTCGTCAAAGGAGTGGTTGATTCGGACGATCTGCCGCTCAATATCTCACGTGAGATGTTGCAGCAGAACAAGATTCTGAAGGTGATAAGGAAGAATTTGGTGAAGAAGTGCATTGAAATGTTCAATGAAATTGCGGAGAACAAAGAGGACTATAACAAGTTTTATGAGGCCTTCTCTAAGAACTTGAAGTTGGGTATCCACGAAGACAGCCAAAACAGAGCCAAATTGGCTGATTTGCTGCGATTCTACTCCACCAGAAGTGGAGATGAAATGACGAGCTTGAAGGATTACGTCACCAGGATGAAGGAGGGTCAGAAGGACATCTACTACATCACCGGTGAGAGTAAAAAAGCAGTGGAGAATTCCCCCTTCTTGGAACGCCTGAAGAAGAAAGGCTACGAGGTGCTTTTCATGGTCGACGCCATTGATGAGTATGCCGTTGGGCAACTTAAAGAGTACGATGGCAAGAAGCTAGTATCTGCCACCAAGGAAGGACTTAAACTTGATGATGAAACAGAGGAAGAGAAGAAGAAAAAGGAGGAGAAAAAGAAGTCATTTGAGAACCTGTGCAAGACTATCAAGGACATCCTTGGTGATAAGGTCGAGAAGGTCGTTGTCTCCGACAGGATAGTGGACTCTCCTTGCTGCTTGGTCACCGGCGAGTACGGCTGGACGGCGAACATGGAGAGAATCATGAAGGCTCAAGCTCTCAGGGACAACAGCATGGGTGCTTACATGTCAAGCAAGAAGACAATGGAGATCAACCCAGATAATGGAATCATGGAGGAGCTAAGGAAAAGAGCCGAGGCGGACAAAAACGACAAATCCGTCAAGGATTTGGTCATGCTCCTCTTCGAAACTGCTCTATTGACTTCTGGTTTCAGCCTTGATGATCCGAATACATTTGCTGCGAGAATTCACAGAATGTTGAAACTTGGTCTTAGCATCGACGAGGAGGAAAATGGAGGAGGAGATGATGCGGACATGCCTGCTTTGGAGGAAGATGGTGCTGAAGAGAGCAAAATGGAGGAGGTCGACTAA 2115 47.38 MADVQMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDKSKLDAQPELFIRIVPDKNNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDVSGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEEDEPKKEEEGDVEEVDEEKETKSKKKKIKEVSHEWQLINKQKPIWLRKPEEITRDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDSRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRFYSTRSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMGAYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEENGGGDDADMPALEEDGAEESKMEEVD 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 437102 440551 - CmaCh16G000980.1 Cma16g00098 310696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00098 704 MobiDBLite consensus disorder prediction 677 704 - -
Cma16g00098 704 CDD HATPase_Hsp90-like 19 207 - -
Cma16g00098 704 MobiDBLite consensus disorder prediction 220 250 - -
Cma16g00098 704 Gene3D - 522 673 IPR037196 -
Cma16g00098 704 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Cma16g00098 704 Gene3D - 7 233 IPR036890 -
Cma16g00098 704 MobiDBLite consensus disorder prediction 222 243 - -
Cma16g00098 704 Gene3D - 266 434 - -
Cma16g00098 704 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cma16g00098 704 Coils Coil 232 252 - -
Cma16g00098 704 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Cma16g00098 704 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Cma16g00098 704 PANTHER HEAT SHOCK PROTEIN 90-1 1 703 - -
Cma16g00098 704 PIRSF HSP90_HTPG 1 704 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cma16g00098 704 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cma16g00098 704 SUPERFAMILY Ribosomal protein S5 domain 2-like 267 522 IPR020568 -
Cma16g00098 704 Gene3D - 435 521 - -
Cma16g00098 704 SMART HKATPase_4 32 187 IPR003594 -
Cma16g00098 704 Coils Coil 527 547 - -
Cma16g00098 704 Pfam Hsp90 protein 189 689 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cma16g00098 704 MobiDBLite consensus disorder prediction 675 704 - -
Cma16g00098 704 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cma16g00098 704 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00098 K04079 HSP90A, htpG; molecular chaperone HtpG - csv:101210914 1229.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00315 Cma-Chr5:1362501 Cma16g00098 Cma-Chr16:437102 0 dispersed
Cma12g00401 Cma-Chr12:2070855 Cma16g00098 Cma-Chr16:437102 0 dispersed
Cma15g00849 Cma-Chr15:4288425 Cma16g00098 Cma-Chr16:437102 0 dispersed
Cma16g00098 Cma-Chr16:437102 Cma16g00991 Cma-Chr16:7629973 0 dispersed
Cma16g00098 Cma-Chr16:437102 Cma06g00695 Cma-Chr6:3499950 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00098 Cma_Chr16 FPKM 8.950235 8.311432 29.29665 29.990759 9.028448 11.155428 8.633401 220.79718 224.168152 207.695541