Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00099 ATGGCGGCCGGATCCTTAAAGAGGAGGCAGTCTAAGCGATCGAACTCCAAGCCGCCTGCGGCCATGGCTTCTCGACCTTCTCATCAACGTTTCCTTACCCCTAGAAATACTGCTCTGCTAGTTTCGAGTTCTCTGGTTTTCTTTGTTGTTCTGGTCTTCGGCATTTCTTTTAATGTATTGCGAAGATCGGCCAAATATGAAGTTCAATCGCCAATGATTTACTCTATTGAAGTGGTCAACGAATTTCCTCACGATCCTAGAGCCTTCACTCAGGGACTGGTTTATGCAGACAATGACACCCTATTTGAGTCCACTGGCCTTTATGGAGAGTCATCAGTTCGAAAAGTAGCTCTCTCTACTGGGAAGGCTGAGGCTCTTCACAAGATGGATGACAATCAGTTTGGGGAAGGATTAACACTTCTCGGGGAGAGGCTGTTTCAAGTAACTTGGTTGAAGAAAACTGGTTTCATATATGACCGAGATAATTTAAGAAAAGTTAAGGAATTCACTCATCAAATGAGTGATGGTTGGGGATTGGCAACAGATGGAAAGGTTTTGTTTGGAAGTGATGGGACGTCAACATTATACCAAATTGAACCAGAGACATTTACAGTTACTAATAAATGGGTTGTGAAATATCAAGGAGATGAGGTGCATAACCTCAATGAGCTGGAATTTGTTAATGGAGAAATCTGGGCAAATGTTTGGATGACTGATTGCATCGTCAGAATCTCAATACGTGATGGAAGTGTGCTTGGATGGGTTCTCCTCCCAACTCTGAGACGGAAATTGTTGCAAGGCGGGAGACAAATTGATGTTCTAAATGGCATTGCATGGGATAGCGACAAGAATCGCCTTTTCGTGACAGGGAAGCTTTGGCCAAAGCTCTTCGAAATCAGAGTGCAGCCATCAAAGGAGCATTATGATAGCCATTTCCATGAACAAGAAGGTCTACATCCGTCCGACCCGATCAAACAAATACAATACACGCAATTAACTCAACATTTTTCTCAGAGTCAGAGGCAGGTAATATTTGTAGGATTTGAAACGTTATGGGGATCTTTGAGCTTTGGACACTTTGGATTTCATGTAGCTTTAGTTTATAGCATACCACTGTAA 1119 42.81 MAAGSLKRRQSKRSNSKPPAAMASRPSHQRFLTPRNTALLVSSSLVFFVVLVFGISFNVLRRSAKYEVQSPMIYSIEVVNEFPHDPRAFTQGLVYADNDTLFESTGLYGESSVRKVALSTGKAEALHKMDDNQFGEGLTLLGERLFQVTWLKKTGFIYDRDNLRKVKEFTHQMSDGWGLATDGKVLFGSDGTSTLYQIEPETFTVTNKWVVKYQGDEVHNLNELEFVNGEIWANVWMTDCIVRISIRDGSVLGWVLLPTLRRKLLQGGRQIDVLNGIAWDSDKNRLFVTGKLWPKLFEIRVQPSKEHYDSHFHEQEGLHPSDPIKQIQYTQLTQHFSQSQRQVIFVGFETLWGSLSFGHFGFHVALVYSIPL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 440870 446062 + CmaCh16G000990.1 Cma16g00099 310697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00099 372 Pfam Glutamine cyclotransferase 63 301 IPR007788 GO:0016603|GO:0017186
Cma16g00099 372 SUPERFAMILY YWTD domain 110 305 - -
Cma16g00099 372 PANTHER - 12 311 IPR007788 GO:0016603|GO:0017186
Cma16g00099 372 MobiDBLite consensus disorder prediction 1 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00099 K22757 QCT, qpcT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] - csv:101211661 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00099 Cma-Chr16:440870 Cma18g01268 Cma-Chr18:9855086 2.40E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g761 . . . . Bpe03g00154 . Bma10g01253 Bma14g02043 Cmo16g00106 Cmo18g01300 . . . . . . Cpe14g00084 . . . . . . . . . . . . . . . Cone5ag0891 Cone14ag0056 . Lsi05g01194 . . Cme06g01030 . Blo09g00064 . . . . . . . . . Cma16g00099 . Car16g00089 Car18g01180 Cpe09g00067 . . . . . . . . Cla05g00914 Cam05g1000 Cec05g1003 Cco05g0998 Clacu05g0988 Cmu05g0944 Cre05g1025 . Csa03g01747 Chy06g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005643 1 0 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 0 1 2 1 1 1 1 1 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00099 Cma_Chr16 FPKM 13.720397 14.410728 5.452443 6.077229 7.035123 7.945329 7.625195 7.911904 8.815619 8.946441