Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00100 ATGATCTTAACTTCCTTCCCTAGTCCTTCTGCTTCGAAAACTACATCGCCCTCTTTGTTCAAGAATTCTACACTCCATACTTCCATCTCTCTGTCTCTCATTCTGTTCCACACCATGGCGTACAACTCTTCTTCCATTCACGAATGGCTATCCAGCCGAACCGCATTGGGAGTCAAGCTATGGCTTCTGATTCTAACTTCCGTTCTGGTATTTCTTCTTTTCCTTCTCATTCTTGCCTTCATTTTTCACGTCTGTTTCCGTCAACGGAGGCGGAATTGGAACCGTCCCTGCTATGATCGCGAAGCTGCGATTTCCACGGAGATGGAGATGAACATAAAGAACGGTTCCGTAGATCGGTTTTCACGGCATGGCAGTCTGAATACTCAGCGTAGTATCGTCACAAATTGGGAGTATTCGGCCGGCCAATACTTTCCTGCGGCGTGTAAGGACCAGTGGAGAAGGAACATATTTGCATTGGATGAGATCGTATTAGCAACCAATGGATTCAGCGGAGAGAATGTCATTAGCATCGAAGATTTTGATGTTGATTACTTCGGAAATTTGGTCGATGGTTCAAAAGTGATTATTAAGATATTCAGTGCAAATAACAGTCTCGGAGAAAACGAGTTCATCAGAGAAGCAGAGAGAATTCAGCATGTTAGCCACAAAAATCTGATTAAGTTGCTTGGATATTGCACTCAAGGAATTGCTAATAATAGGATGTTTGTTTATAAAAATGTAGATAACGGGAATTTGCACCAGTGGCTTCATCAATGTCCACAGAATCACTTTAGCCCTCTTACATGGTCCATTAGGATGAACATTGTTCAAGGAATTGCAAAAGGAAATGTGATGGATGACTCTGCTGATTTAATTACACCGAGGGACTATTTGTGTTTCTGCAGATTAGCATATCTTCATGAAGATGTGGAACCACAAATTCTTCATGGCAGGCTAAGATCCAGCTGCATATTACTTGATCAGCAATGGAATCCCAAGATTGCCAATTTCGGTCTAGTTGAGCTGTTGCCATCTGAGTACTCAGCTGGAGCTTTGGCTGGAGAAACCTTTGGTATACTTCTCATGGAGATTATAACGGGAAGAGCTCCCGCGAACTGCAACCAATCACAACCAGATTTGATAGAGTGGGTGAAAACAATGATTGGGAGTCAAAAGGCAGTTGAAACAGTGGATTTCAAAATGGAAGAAAAACCATCCTCAAAGCAACTCAAACGGATGCTCTTAATTGCCCTTCGCTGTGTTGATCCAGACATACTGAACAGGCCTACTATGGGTCAAATCCTTCTCATGCTTCAGCCTCGCGACCTTTTGCTCGCCCATGGGTGGGGAGGACGAAAGTGGATTGTCGTCTTAAGTGATTTGCTGTCGTCTGCTGTTCCTTCGGCGGCCATCAACTCCACGTTCGTAGTCCCTGCTTCTCCCTCTTCCACCGTCTTTTCACTTTTCACCTTCATCTCTCCCATGGCGGCCGCCCTCTCCGCCGCCTTAGGGCCCAAACCACTCCATCTCTTCCTTGCTTCCTCTCATCTCTCCCATAAACCTCGAACTCCGTTTCTGTTTCCACCTTCAGTCTTTCGGAACAGTAGAATCCAACGGAAGATGCGGAGAAAAACGCTGTTCACTGTCTGCGTGCTCGTTGAGGATCAAAATAGCTCTGGCGAGGTGGAGAATCTTTCCGATGAAGAACCGCCGATTGTAGTCCCCCAGATCCCATCGCCTTATGTTGCACAAAGATTGGCAAGGAAGAGATCGGAGCGCTTCACTTATCTTGTTGCTGCGGTTATGTCTAGTTTTGGAATTACCTCCATGGCTGTCATGGCGGTTTATTACCGATTTTACTGGCAAATGGAGGGCGGAGAGATTCCTTTCTCTGAAATGTTTGGTACATTTTGTCTCTCTGTTGGTGCCGCTGTCGGCATGGAGTTTTGGGCGAGATGGGCTCATAGGGCTCTCTGGCACTCTTCCATGTGGCATATGCACGAGTCGCACCATAAACCAAGAGAAGGGCCGTTCGAACTGAACGATGTCTTCGCCATTATCAATGCCGTGCCCGCCATAGCTCTCCTCTCTTACGGCTTCTTCCATAAAGGCCTCGTCCCCGGTCTCTGCTTCGGCGCTGGCCTTGGAATTACGGTCTTTGGGATGGCCTACATGTTCGTCCACGACGGTCTTGTTCACAAAAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTATTTCAGAAAGGTCGCTGCCGCTCACCAGCTTCACCATTCGGACAAGTTCAACGGCGTGCCATATGGACTGTTTTTAGGTCCGAAGGAATTAGAGGAAGTGGGAGGCCAAGAAGAATTGGAGAAGGAAATCAACAGAAGAATAAAATTGACGACAACAAAATCAATCAACGGCTCTTGA 2415 46.58 MILTSFPSPSASKTTSPSLFKNSTLHTSISLSLILFHTMAYNSSSIHEWLSSRTALGVKLWLLILTSVLVFLLFLLILAFIFHVCFRQRRRNWNRPCYDREAAISTEMEMNIKNGSVDRFSRHGSLNTQRSIVTNWEYSAGQYFPAACKDQWRRNIFALDEIVLATNGFSGENVISIEDFDVDYFGNLVDGSKVIIKIFSANNSLGENEFIREAERIQHVSHKNLIKLLGYCTQGIANNRMFVYKNVDNGNLHQWLHQCPQNHFSPLTWSIRMNIVQGIAKGNVMDDSADLITPRDYLCFCRLAYLHEDVEPQILHGRLRSSCILLDQQWNPKIANFGLVELLPSEYSAGALAGETFGILLMEIITGRAPANCNQSQPDLIEWVKTMIGSQKAVETVDFKMEEKPSSKQLKRMLLIALRCVDPDILNRPTMGQILLMLQPRDLLLAHGWGGRKWIVVLSDLLSSAVPSAAINSTFVVPASPSSTVFSLFTFISPMAAALSAALGPKPLHLFLASSHLSHKPRTPFLFPPSVFRNSRIQRKMRRKTLFTVCVLVEDQNSSGEVENLSDEEPPIVVPQIPSPYVAQRLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFYWQMEGGEIPFSEMFGTFCLSVGAAVGMEFWARWAHRALWHSSMWHMHESHHKPREGPFELNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSDKFNGVPYGLFLGPKELEEVGGQEELEKEINRRIKLTTTKSINGS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 447168 454066 + CmaCh16G001000.1 Cma16g00100 310698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00100 804 Gene3D Transferase(Phosphotransferase) domain 1 356 443 - -
Cma16g00100 804 Gene3D Transferase(Phosphotransferase) domain 1 247 354 - -
Cma16g00100 804 PANTHER BETA-CAROTENE HYDROXYLASE 506 796 - -
Cma16g00100 804 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 506 796 IPR045019 GO:0016491
Cma16g00100 804 SUPERFAMILY Protein kinase-like (PK-like) 160 440 IPR011009 -
Cma16g00100 804 Pfam Fatty acid hydroxylase 643 770 IPR006694 GO:0005506|GO:0008610|GO:0016491
Cma16g00100 804 Pfam Protein tyrosine and serine/threonine kinase 192 343 IPR001245 GO:0004672|GO:0006468
Cma16g00100 804 ProSiteProfiles Protein kinase domain profile. 159 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00100 804 Gene3D Phosphorylase Kinase; domain 1 141 245 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00100 Cma18g01268 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00100 Cma-Chr16:447168 Cma18g01268 Cma-Chr18:9855086 0 dispersed
Cma14g02059 Cma-Chr14:14306599 Cma16g00100 Cma-Chr16:447168 5.33E-71 wgd
Cma15g01247 Cma-Chr15:7922649 Cma16g00100 Cma-Chr16:447168 1.77E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69174 PF07714 PK_Tyr_Ser-Thr 2.30E-12 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00100 K15746 - bhj:120069722 577.015