Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00104 ATGGCGATCTCCAAACTCCTCTTTCTCCTTCTTCTTTTCCTTCCTTTTCTTTCTGCTGATGTTGTTCCCTCTGACATTTACCTTCTCAGCTGCGGATCATCCTCCAATTCCTCCTTCTTTAATCGCGTTTTCGTTGGCGATTCATTAAAACCCGCCCCCGGCTTTCTCGTCGCCGGCCGATCGGTGGCGGTTTCCAACCGGAATCCACCTCCGGATTCTACCTCTTTGTATCACACTGCCAGAGTTTTCACCAGGGCCTCAAGCTACAAATTCAACCTCAAGAAGAACGGTACTCACTTGCTACGGTTCCATCTTTCGCCATTTTCGGCGCTGGAATTCGATTTACATTCTGCAAATTTCACTATCTCGGCCAACGGATTGTTGCTTTCTAATATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTCATCGTGAGAATTGACGCCAACGTGCTTGAAATCGAGTTCGAACCGGTTTCGGGTTTGGGTTTTGGATTCGTGAATGCAATCGAGGTATTTTCAGCCCCTAAAGAACTCATCACCGATAATGGAGCTAAGCTTGTGGATTCTAATGGAGTTCGAGAATATTACAAACTCACATCGCAAGTCTTGGAAACCAAATACAGAATTAACGTTGGGGGTTCCAAATTGACCCCGCTTAACGACAGTCTTTGGAGAACTTGGGTGCCCGATGAGCCTTATCTGGTTATAAAGTCGGCGGCAAAGCTTGCCTCAACTTTTCAGGCTCCGTACTATCAGGCCAGCGGCGCCACTCGGGAGGATGCGCCGGACATTGTTTACATGACGGCGCAACAGATGAACAAGGATATCACAGTTTTGGGTGCGAAATTTAACCTCACCTGGAAGTTTCCATTGGATTCTAATGGCATGAAGTACTTGGTTCGCTTGCATTTCTGTGATATTGTTAGCTTTGCTCTTAATCAGTTGTATTTCAATGTGTATATCAATGGCTATCCTGCATATAGGGACCTGGATTTGTCATCTCTTTCCTCTCGGCTATTAACTCCTTTTTATTTTGATTTCATTGTGGATTCTGATGGTTCTGGAAATATTCAAATAAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGGGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAGATGGTGAGACCTAGGGGTATGTTTTCAGAAACTGAGAAGAAAAAGAGAAATTCATGGGTCATTGTAGGTCCTATTGTTGGTGGATTCGTTGGTTTATGTCTGGTTTTTGCTGCAATTCTTGCTTTGGTATGCAAGAGGAGAAAGAAACCGACGCCGAGGCGGGCGGAGAGTGCAGGCTGGACTTCGGTTCAGGCATATGCAGGTGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTGCATCTTTTGGGCCAAATGGATACCACAACTTGAAGATCCCCTTCACTGAAATTCAGTCAGCAACAAACGATTTCGACGAGAGTTTGATCATTGGTTCGGGCGGATTTGGTATGGTTTACAAAGGGGTTCTTAGGGACAATATAAATGTTGCTGTGAAGAGAGGTGTGCCAGGATCACGGCAGGGCCTTCCTGAATTCCACACTGAGATAGCTATCTTGTCCAAGATTCGACATCACCATCTTGTTTCACTTGTTGGATACTGCGAAGAACAGTCAGAAATGATACTGGTTTATGAATATATAGAGAAAGGTCCATTGAAAAAGCAATTGTATGGCTCGGTCGTGTCTCCTTTGTCGTGGAAGCAACGACTCGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGTTTTGCACAGGGCATCATCCACCGCGATATCAAGTCGACCAACATTTTACTGGATGAGAGCTTTGTTGCTAAAGTTGCCGATTTTGGTCTTTCAAGATCGGGGCCTCGTCTCGACGAGACACACGTTAGTACGGGAGTAAAAGGTAGCTTTGGCTATCTTGATCCAGAGTATTTTCGAAGACAACAACTCACTGATAAGTCGGATGTGTATTCATTTGGAGTAGTGCTCTATGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGATAGGGAACAAGTAAATCTCGCCGAATGGGCATTGCATTGGCAACGGAAAGGAATGCTCGAAAAGATCATCGATCCACATTTGGTCGGGAAAATCAATCCGAGTTCGTTAAAGAAATATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGAATTGACAGACCAACAATGGGAGATGTCTTATGGAACTTGGAATATGTTCTTCAACTACAAATCGAGCTACCGATCGAGCCATCAGAACCCGTAGATGTCAATGAATCCAACTTTCCGACGTCCACTGCAACTCATCCAAGCGACTTGAGGAGACATTCAGATGAAGGTACTGGTAACTATTCAGACGCAAGTACAACCAAAGTTTTCTCCCAGTTGCTTACTAATGATGGAAGATAG 2478 44.47 MAISKLLFLLLLFLPFLSADVVPSDIYLLSCGSSSNSSFFNRVFVGDSLKPAPGFLVAGRSVAVSNRNPPPDSTSLYHTARVFTRASSYKFNLKKNGTHLLRFHLSPFSALEFDLHSANFTISANGLLLSNISHVNDSVIKEFIVRIDANVLEIEFEPVSGLGFGFVNAIEVFSAPKELITDNGAKLVDSNGVREYYKLTSQVLETKYRINVGGSKLTPLNDSLWRTWVPDEPYLVIKSAAKLASTFQAPYYQASGATREDAPDIVYMTAQQMNKDITVLGAKFNLTWKFPLDSNGMKYLVRLHFCDIVSFALNQLYFNVYINGYPAYRDLDLSSLSSRLLTPFYFDFIVDSDGSGNIQISVGPSDLSSSLGYNAILNGAEIMEMVRPRGMFSETEKKKRNSWVIVGPIVGGFVGLCLVFAAILALVCKRRKKPTPRRAESAGWTSVQAYAGGSSDSKLSRGSTLASFGPNGYHNLKIPFTEIQSATNDFDESLIIGSGGFGMVYKGVLRDNINVAVKRGVPGSRQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYIEKGPLKKQLYGSVVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDESFVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLYEVLCARPAVDPLLDREQVNLAEWALHWQRKGMLEKIIDPHLVGKINPSSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIELPIEPSEPVDVNESNFPTSTATHPSDLRRHSDEGTGNYSDASTTKVFSQLLTNDGR 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 465761 468238 - CmaCh16G001040.1 Cma16g00104 310702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00104 825 SUPERFAMILY Protein kinase-like (PK-like) 473 761 IPR011009 -
Cma16g00104 825 Gene3D - 203 386 - -
Cma16g00104 825 Gene3D - 25 176 - -
Cma16g00104 825 Pfam Protein tyrosine and serine/threonine kinase 496 687 IPR001245 GO:0004672|GO:0006468
Cma16g00104 825 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 777 - -
Cma16g00104 825 SMART serkin_6 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00104 825 Gene3D Transferase(Phosphotransferase) domain 1 566 771 - -
Cma16g00104 825 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00104 825 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cma16g00104 825 Pfam Malectin-like domain 29 384 IPR024788 -
Cma16g00104 825 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
Cma16g00104 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cma16g00104 825 MobiDBLite consensus disorder prediction 776 813 - -
Cma16g00104 825 PANTHER OS07G0166700 PROTEIN 16 777 IPR045272 GO:0004714|GO:0006468
Cma16g00104 825 CDD STKc_IRAK 496 761 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00104 - - - csv:101211413 1397.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00104 Cma18g01264 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00104 Cma-Chr16:465761 Cma20g00441 Cma-Chr20:2089714 0 dispersed
Cma04g01870 Cma-Chr4:9516574 Cma16g00104 Cma-Chr16:465761 0 transposed
Cma16g00104 Cma-Chr16:465761 Cma18g01264 Cma-Chr18:9840380 0 wgd
Cma16g00104 Cma-Chr16:465761 Cma08g00891 Cma-Chr8:5518087 5.18E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69175 PF12819 Malectin_like 2.20E-32 CL0202 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00104 Cma_Chr16 FPKM 0.294189 0.327454 0.506612 0.632274 1.289505 1.403549 1.315574 1.113639 1.086898 1.105792