Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00105 ATGGCCTTACAGTCGCAGCTCGCCTCGAAGTCGCCCGAAGTACAGCTTCTATGTTTGTCTTCCTGCAAAATCTCAGCTAGAATCTCCAGGAGCATCGCGATCGCTCTTCGGCCACCAGTGCAACCGTTGTCGTCGTCGTCATCAGCAGCAGCTGAAAGTGCACGCCGAAGATTCTGGAACTTTTGCGGCACCAGTACTGGAAATGTTCAACTGAGACGAAATGTTGCTGTTAGATCTCATCTGAAATTGAATCTCCCCCTCATTTCTCCGCATGACCAGTGGGGCAACTGGACTGTTTTATTCTCCGTTGGAGCCTTCGGTATCTGGTCTGAGAAAACGAAGGTTGGTAGTGCATTAAGTGGTGCCCTAGTGAGCGCATTGGTGGGACTTGCAGCCAGTAATTTTGGGATCATTGCATCTGATGCTCCAGCTTTTCCTTTTGTTTTGGAGTTTTTGCTACCGTTAGCAGTTCCTATGCTGTTATTTAGGGCAGATTTGCGCAATGTAATAAAGTCAACTGGGACACTTCTCTTGGCATTTTTGTTAGGTTCAGTTGCAACAACAATTGGAACTGTTGTGGCCTATTTTCTTGTACCAATGCAATCACTTGGTCAGGACAGTTGGAAAATTGCCGCCGCACTAATGGGAAGACATATTGGTGGAGCTGTCAATTATGTCGCTATATCTGATGCCCTTGGTGTCTCTTCATCAGTATTAGCAGCTGGACTTGCTGCGGATAATGTAATTTGTGCAGCGTATTTTGCAACATTGTTTGCTTTAGCATCTAAAGTACCTCCTGAACCAACGACATTTAATGATGCGACGGATGCTGGAAAGGATGCAGAAATTGAGGATAGCAGCAAGCTTCCGGTGTTACAATCTGCCACAGCCCTTGCTGTATCGTTTGCCATTTGTAAAGCTGGTTCCTACCTGACCAAATATTTTGGAATTCAAGGTGGTAGCATGCCAGCAATTACCGCCATCATTGTTGTCTTAGCAACCATTTTTCCCAAGCCGTTTGCTTACCTTGCTCCTTCTGGTGGGGCTATGGCTATGATTCTAATGCAGATTTTCTTTGCTGTAGTGGGAGCAAGTGGAAATGTATGGAGTGTCATCAGCACTGCGCCAAGTATCTTCTTGTTTTCTCTTGTCCAGATTGCAGTCCATCTTGCCATAATCCTTGGTCTTGGAAAGCTGCTTCGCTTCGACCAAAAGTTGCTGCTGATAGCATCGAATGCCAACGTCGGAGGTCCCACTACAGCCTGCGGGATGGCCACGGCTAAGGGTTGGAGTTCAATGGTTATTCCTGGAATTCTTGCTGGAATTTTTGGAATCGCTATTGCAACTTTCCTAGGGATTGGATTTGGAATGATGGTCTTGAAATACATGTAA 1392 46.05 MALQSQLASKSPEVQLLCLSSCKISARISRSIAIALRPPVQPLSSSSSAAAESARRRFWNFCGTSTGNVQLRRNVAVRSHLKLNLPLISPHDQWGNWTVLFSVGAFGIWSEKTKVGSALSGALVSALVGLAASNFGIIASDAPAFPFVLEFLLPLAVPMLLFRADLRNVIKSTGTLLLAFLLGSVATTIGTVVAYFLVPMQSLGQDSWKIAAALMGRHIGGAVNYVAISDALGVSSSVLAAGLAADNVICAAYFATLFALASKVPPEPTTFNDATDAGKDAEIEDSSKLPVLQSATALAVSFAICKAGSYLTKYFGIQGGSMPAITAIIVVLATIFPKPFAYLAPSGGAMAMILMQIFFAVVGASGNVWSVISTAPSIFLFSLVQIAVHLAIILGLGKLLRFDQKLLLIASNANVGGPTTACGMATAKGWSSMVIPGILAGIFGIAIATFLGIGFGMMVLKYM 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 469649 472966 + CmaCh16G001050.1 Cma16g00105 310703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00105 463 Pfam Protein of unknown function (DUF819) 98 461 IPR008537 -
Cma16g00105 463 PANTHER PROTEIN, PUTATIVE (DUF819)-RELATED 44 463 - -
Cma16g00105 463 PANTHER PROTEIN, PUTATIVE (DUF819)-RELATED 44 463 IPR008537 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00105 - - - csv:101211894 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00105 Cma-Chr16:469649 Cma16g00109 Cma-Chr16:491986 1.33E-24 proximal
Cma16g00105 Cma-Chr16:469649 Cma02g01077 Cma-Chr2:6412194 4.04E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g746 . . Bda05g00089 Bda07g01897 Bpe03g00270 . Bma10g01240 . Cmo16g00113 . . . . . . Cpe05g00642 Cpe14g00090 . . . . . . . Cla01g00095 Cam01g0097 Cec01g0097 Cco01g0098 Clacu01g0095 Cmu01g0097 Cre09g2410 . . . Cone15ag0065 Lsi05g01202 Csa05g00110 . . Blo07g00385 . . Bda15g00712 . . . . . . . Cma16g00105 . Car16g00094 . . . . . . . . . . Cla05g00904 Cam05g0988 Cec05g0994 Cco05g0992 Clacu05g0976 Cmu05g0933 Cre05g1018 Lsi09g00083 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001720 1 1 2 4 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 3 9 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00105 Cma_Chr16 FPKM 1.557223 1.739561 0.457922 0.0 1.771049 2.013865 2.536247 0.534858 0.407949 0.52393