Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00107 ATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAGGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTTTTGTATCTTGGGGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGCCCGACTGGTATTGTATATGCCGTCGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATATCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCTAACTGCATCGACTCAACCGTTCCTGCAGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGATCCGCCGTTGCAGGGAAGGCTAATGCCATGAATTCACAAAGAAAAAGTGGGCTTAGCGGGCGAAAGCCTCTTGGCGATCTATCAAACTCGAGAAAGCCAGACTTAAACCAGTCATCAAAATGGCAAAACACAAAGAATCTCACGTTTATTGATGAAGAAACTGGTGCAGGCAAAAAGAAAAACATACTCAAGGGCTCTGAGAAGGTGCAGAAGGGAACTCGAAAAGTACTCTCGGATATTTCGAACTCTGGAATGCCAAACCTGCCGGAGGCCTCAAAGAAGAAGCAGAAATTGAAACTGAGCACTGTAAGGGAAGAATCTCTCCATCACAATGCTATTTGTGAGGAACGCTTCCTGCACAACCATCAAGATTGCATTAAATCACAAAATAGCGCTATGGACAAGGATCAATTTCTGAGCATCGTTGGACTTGATCTTCCCAATGAGTTGATGACATCCACTAGAAGAAAGCCTGATAGTCCATTGAAGCTCATGGAAATGGCAGAATTGGCAGTTGTTGATCGATCTCCAAAGAAGTTGTGTCTGTTTGGAAGGGGATGGCCCGCCTCATCGCCGCCTTGCAAATCCCCAAAATCACCCTCAGTGGATACATTTTCTCTCTGGAAGGACACCGATAACAAAGATGAATTGAGAGTTCAAGAAGAAATATACTGGAAGCAAGAGATCCAACATGGTGAGATCAATGGAGTTCTTGAAGGCGCATACGAGGCGCACTTGTGGAACATGGCAGTTCGGTTTCGTGCTTCGAACGATCATAATCTCTCGGATTATCGAAATGAACGGAGTAATCCCGCTTCCTCCGCTTATCAGGAGCAAAGATTCATGCCTGATAAAACATCAATCAAATTCAAGTAA 1683 46.35 MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGSAVAGKANAMNSQRKSGLSGRKPLGDLSNSRKPDLNQSSKWQNTKNLTFIDEETGAGKKKNILKGSEKVQKGTRKVLSDISNSGMPNLPEASKKKQKLKLSTVREESLHHNAICEERFLHNHQDCIKSQNSAMDKDQFLSIVGLDLPNELMTSTRRKPDSPLKLMEMAELAVVDRSPKKLCLFGRGWPASSPPCKSPKSPSVDTFSLWKDTDNKDELRVQEEIYWKQEIQHGEINGVLEGAYEAHLWNMAVRFRASNDHNLSDYRNERSNPASSAYQEQRFMPDKTSIKFK 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 477548 485377 - CmaCh16G001070.1 Cma16g00107 310705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00107 560 ProSitePatterns Fibrillarin signature. 166 180 IPR020813 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 224 - -
Cma16g00107 560 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 223 275 - -
Cma16g00107 560 MobiDBLite consensus disorder prediction 277 312 - -
Cma16g00107 560 Gene3D Vaccinia Virus protein VP39 119 224 IPR029063 -
Cma16g00107 560 Gene3D Vaccinia Virus protein VP39 225 271 IPR029063 -
Cma16g00107 560 MobiDBLite consensus disorder prediction 1 65 - -
Cma16g00107 560 PRINTS Fibrillarin signature 86 105 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PRINTS Fibrillarin signature 166 183 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PRINTS Fibrillarin signature 141 162 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PRINTS Fibrillarin signature 114 133 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PRINTS Fibrillarin signature 191 220 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 Gene3D Phosphorylase Kinase; domain 1 63 118 - -
Cma16g00107 560 SMART Fibrillarin_2 68 273 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 MobiDBLite consensus disorder prediction 535 550 - -
Cma16g00107 560 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 269 IPR029063 -
Cma16g00107 560 Pfam Fibrillarin 68 225 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cma16g00107 560 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 224 - -
Cma16g00107 560 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 223 275 - -
Cma16g00107 560 MobiDBLite consensus disorder prediction 530 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00107 K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] - csv:101206527 409.068
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00107 Cma18g01262 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00107 Cma-Chr16:477548 Cma18g01262 Cma-Chr18:9826835 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004999 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00107 Cma_Chr16 FPKM 22.661018 25.106735 12.773676 14.941448 34.726406 33.830925 34.188396 28.465414 26.651388 29.203835