Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00109 ATGGCGCCAGAGAACATCATCGTGTTCACCGTTTTCGCCGACTGCCGCAAACGCGCCCATCCGCCAATGCCTGAGAGCTACTTCGGAAACCTAATCCAAGCCATATTCACCGGCACCGCCGCCGGGCTACTACTAATGAATCCGCTGGAATTCGGCGTCAGCATGATCTTAAAGGCGATCGTTTCACACGATGCGGCGGCGATCGATCAAATAAACAAAGAATGGGAGAGCACGCCGAAGATCTTCCAGTTCAAGGACGCGGGAATGAACTGCGTGGCGGAGGGGAGTTCGCCGAGATTTAAAGTGTACGAGGTGGATTTCAGATGGGGAAAACCGGAGAGCGTGGGAAGTGGATGTAACAACAGATTCGAGGGAATGATGTATCTGTACCAAGGGAAGGGCGGAGGGAGGAGCATTGATGTGGAGAAGAAGCTATGGCGTGGATGGAGAAGGACAAGGAACTATTATTCTTCAGTTCATTGTCATCTCATTGATGTTTTGTTCTTTGTTTGTATGGGTGCAGCTGTCAATTATGTTGCTATATCTGATGCTCTTGGTGTTTCTTCATCAGTATTAGCAGCTGGACTTGCTGCGGATAATGCAATTTGTGCAGCGTATTTTGCAACATTGTTTGCGTTAGCATCTCAAGTACCTCCTCAACCAACGACCTTTAACGATGCTACGGAGTTGAGGAGTCTGGAAATCATGAACTTGTATTTGAGATGTTGCGTTGGGAAGGCTGGGAATCAAAAACCTGTATTTAGGCAAATGGCAAAGGAAATGGCAATGGCTAGAGCTCTGAAGAGGATTTTCTTGTTAACTTTTGTGCTATGTCTGTGGTTTTGGACTATGTTGCACACAAAGCTTTACAAGAACACTTGGACCCCAAAGCTCAAGATGGAACTGAACTCCACATATTTTAGAGAACAAGGCACAAATCTTCTACTTTTCTCATTTCCCATCATGTTCATGTCAGTTTTGGGTTGTTTTTATCTCTATTTGCAGAAGAATTCTTCAGAAGATTCTAAACCCTTTTCTACCCAAAGGAGCCGAGGAGATTCATTTCTGAAACGACCAATTCTGGCAATGAATCCTCTGGGGATTGTTAATACATTGGAGATCGGGTTCGCAGCTGCATTTGTTATACTTTTGATTTGGTCTCTTGGAAATTACTTGTACGTCAGTTTTGGCAATCTTCACATGCATGGAGCTGGCGAGAAAATTTGGGAAGCCAAGTTTAGAAGTGTATCACTGAGACTTGGGTACATTGGACATATATGCTGGGCATTTCTTTTCTTTCCAGTCACAAGAGGGTCTTCATTATTGCCTCTAATTGGACTCGCATCTGAATCAACCATCAAATATCACATCTGGCTTGGCCACATTTCTAATCTTCTCTTTGCTTTAACACCGTTGGATTCATCATCTACTGGGGGATCACAGATCAAATGGCTTTGCTACAGCAACAAAACTCTCAATTCCAAATTAAGATCCAAGTTAATTTCTATTGAACTAAGCTACAGTCCAACAAGTGTGATGTTCCTAAATGTGCCAAGCATTTCCAAACTGCAGTGGCATCCCTTCACGATCACTTCTAACAGCAAATTGGAGCCTGATATAGTGAGTGTTGTTAGCAAAGTAGGGGGAAGCTGGACTTCCAAACTTCACCAGCAACTTTCTTCTTCTCTGGATCACCTTCAAGTTTTTGTTGAAGGTCCATATGGGCCTGCTTCCACTCACTTTTTAAGGCATGAATCTCTGCTGCTGATAAGTGGAGGAAGCGGAATTACTCCCTTCATTTCGATAATCAGAGAGATAATGATTGTTCGAAGCACAAAACCGGACTGTCATGTTCCGCAAGTGCGCCTCATCTGCGCCTTCAAGAACTCCATGGATCTCACCATGCTGGATCTCTTGCTTCCAGTATCTAGCACACAAACAGAAATTTCAAATGTACCATTACAGATTGAAGCTTATATCACCAGAGAGGAAGAACCGCCTCAAACAAATGAGGAAAATCTTGTAAACACAATATGGTTTAAGCCAAACCCACGGGACTCACCAGTGTCAAGAGGCTCTTGGACCAAACCATTGGCTGCTCCTTGGCGCAGTCATCTCATCTTCGTTCATGATGTTCTTGATTCTCTTAGGCATCATCACTCGCTACTACATATACCCAATTGA 2184 44.0 MAPENIIVFTVFADCRKRAHPPMPESYFGNLIQAIFTGTAAGLLLMNPLEFGVSMILKAIVSHDAAAIDQINKEWESTPKIFQFKDAGMNCVAEGSSPRFKVYEVDFRWGKPESVGSGCNNRFEGMMYLYQGKGGGRSIDVEKKLWRGWRRTRNYYSSVHCHLIDVLFFVCMGAAVNYVAISDALGVSSSVLAAGLAADNAICAAYFATLFALASQVPPQPTTFNDATELRSLEIMNLYLRCCVGKAGNQKPVFRQMAKEMAMARALKRIFLLTFVLCLWFWTMLHTKLYKNTWTPKLKMELNSTYFREQGTNLLLFSFPIMFMSVLGCFYLYLQKNSSEDSKPFSTQRSRGDSFLKRPILAMNPLGIVNTLEIGFAAAFVILLIWSLGNYLYVSFGNLHMHGAGEKIWEAKFRSVSLRLGYIGHICWAFLFFPVTRGSSLLPLIGLASESTIKYHIWLGHISNLLFALTPLDSSSTGGSQIKWLCYSNKTLNSKLRSKLISIELSYSPTSVMFLNVPSISKLQWHPFTITSNSKLEPDIVSVVSKVGGSWTSKLHQQLSSSLDHLQVFVEGPYGPASTHFLRHESLLLISGGSGITPFISIIREIMIVRSTKPDCHVPQVRLICAFKNSMDLTMLDLLLPVSSTQTEISNVPLQIEAYITREEEPPQTNEENLVNTIWFKPNPRDSPVSRGSWTKPLAAPWRSHLIFVHDVLDSLRHHHSLLHIPN 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 491986 497674 + CmaCh16G001090.1 Cma16g00109 310707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00109 727 Pfam FAD-binding domain 504 578 IPR013112 GO:0016491
Cma16g00109 727 PRINTS Cytochrome B-245 heavy chain signature 589 606 IPR000778 GO:0016020|GO:0016491
Cma16g00109 727 PRINTS Cytochrome B-245 heavy chain signature 566 579 IPR000778 GO:0016020|GO:0016491
Cma16g00109 727 Gene3D - 1 147 IPR023213 -
Cma16g00109 727 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 568 642 IPR039261 -
Cma16g00109 727 Pfam Protein of unknown function (DUF819) 172 215 IPR008537 -
Cma16g00109 727 SFLD Ferric Reductase Domain 504 673 - -
Cma16g00109 727 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 437 580 IPR017927 GO:0016491
Cma16g00109 727 PANTHER FERRIC REDUCTION OXIDASE 4-RELATED 504 694 - -
Cma16g00109 727 PANTHER FERRIC REDUCTION OXIDASE 4-RELATED 263 469 - -
Cma16g00109 727 CDD NOX_Duox_like_FAD_NADP 505 630 - -
Cma16g00109 727 Gene3D - 568 710 IPR039261 -
Cma16g00109 727 Pfam Ferric reductase NAD binding domain 584 670 IPR013121 GO:0016491
Cma16g00109 727 Pfam Transferase family 5 145 - -
Cma16g00109 727 PANTHER NADPH OXIDASE 504 694 - -
Cma16g00109 727 PANTHER NADPH OXIDASE 263 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00109 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - csv:101211162 354.369
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00109 Cma18g01261 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01077 Cma-Chr2:6412194 Cma16g00109 Cma-Chr16:491986 2.99E-15 dispersed
Cma10g00097 Cma-Chr10:390200 Cma16g00109 Cma-Chr16:491986 4.39E-18 dispersed
Cma16g00109 Cma-Chr16:491986 Cma03g00365 Cma-Chr3:4264946 2.67E-25 dispersed
Cma16g00105 Cma-Chr16:469649 Cma16g00109 Cma-Chr16:491986 1.33E-24 proximal
Cma16g00106 Cma-Chr16:474290 Cma16g00109 Cma-Chr16:491986 1.63E-106 proximal
Cma16g00109 Cma-Chr16:491986 Cma16g00110 Cma-Chr16:498968 2.30E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g733 . . . . . . . . . Cmo18g01288 . . . . Sed07g1008 . Cpe14g00093 Bhi01g01270 Tan01g0217 Cmetu06g1400 . Hepe07g0137 . . . . . . . . . . . . . Lsi05g01208 . . Cme06g01023 . . . . . . . . . . . Cma16g00109 Cma18g01261 Car16g00097 Car18g01170 Cpe09g00076 . . . . . . . . Cla05g00900 Cam05g0984 Cec05g0989 Cco05g0987 Clacu05g0972 Cmu05g0929 Cre05g1014 . Csa03g01735 Chy06g00966 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003178 1 1 4 1 3 2 0 1 1 1 1 2 2 1 1 2 2 3 2 1 1 3 2 1 1 2 1 3 3 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00109 Cma_Chr16 FPKM 1.547838 1.477885 2.618989 2.885098 2.463537 2.091075 2.32875 4.923416 5.221993 5.503103