Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00110 ATGGCGGGTGATCTCCCTGAAGTTGTGAAGAAAGAGGAGACAGGAGGGCTGAAGGTGAAAATCACAGGCAAAACCCATGTCAAACCCGCCAAGAAACTCGACAAAAAAGAGTTCCAATTGGTCACATTTGACCTCCCTTATCTTGCCTTCTACTACAACCAAAAGCTCCTCCTCTACGGCGACAATGGCGGCGAGGTTCGCTTCCCTGAGATGGTGGAGAAGCTCAAGGATGGCCTCGAGACGGTTCTCGAGCCGTTTCATCAGCTTGCTGGGAGGCTAGGCAAGGACAAGGATGGCGTTTTTAGAGTCGAGTATGACGATGATATGGAAGGTGTCGAAGTGGCTGAAGCTGTCGCCGACGATATCTGCATAGCCGATTTGGTGGCGGAGGAAGGCACCGCCACCCTCAAGGAGCTCATTCCTTACAATGGGATACTCAACTTGGAAGGTCTCCAGAGGCCATTGATGGCTGTTCAGCTAACCAAGCTTAAAGACGGAGTCGCGATGGGGTGCGCGTTCAATCACGCGGTACTTGATGGAACTGCCACGTGGCATTTCATGAGTTCATGGGCTGAGATCTGCCGTGGGGCCCAGGACATATCCGTCGCGCCATTTCTCGAGCGTACCAAAGCGCGCAACACGCGAGTGAAACTCGACATAACGCTTCCGCCGGAACCCGCCGCTGCCAACGGCGACTCGAAGGAAGCGGCGGCGGCGCCACCGCTAAGGGAGAAGGTCTTCAAATTTACAGAAGCAGCCATCGACAAGATCAAGTCAAAAGTGAACTCAACAAACCTTCCATCGGACGGTTCAAATCCATTCTCCACTTTCCAATCGCTCTCCGTCCATATATGGCGCCACGTCACCCAAGCCCGAAACCTAAAGCCAGAGGACATCACCGTGTTCACCGTTTTCGCCGACTGCCGCAAACGCGTCGATCCGCCAATGCCGGAGAGCTACTTCGGAAACCTAATCCAAGCCATATTCACCGGCACCGCCGCCGGGCTACTACTAATGAATCCGCCGGAATTCGGCGCCGGCGTGATTCAAAAGGCAATCGTTTCACACGATGCGGCGGCGATCGATCAAAGAAACAAAGAATGGGAGAGCGCGCCGAAGATCTTCCAGTTCAAGGACGCAGGAATGAACTGCGTGGCGGTGGGGAGTTCGCCGAGATTTAAAGTGTACGATGTGGATTTCGGATGGGGAAAACCGGAGAGCGTGAGAAGTGGATGTAACAACAGATTCGACGGAATGATGTATCTGTACCAAGGGAAGGACGGAGGGAGGAGCATTGATGTGGAGATAAGCTTGGAGGAAGAAGCTATGGCGAGGCTGGAGAAGGACAAGGAGTTTCTCATGGAGAATTAG 1371 53.54 MAGDLPEVVKKEETGGLKVKITGKTHVKPAKKLDKKEFQLVTFDLPYLAFYYNQKLLLYGDNGGEVRFPEMVEKLKDGLETVLEPFHQLAGRLGKDKDGVFRVEYDDDMEGVEVAEAVADDICIADLVAEEGTATLKELIPYNGILNLEGLQRPLMAVQLTKLKDGVAMGCAFNHAVLDGTATWHFMSSWAEICRGAQDISVAPFLERTKARNTRVKLDITLPPEPAAANGDSKEAAAAPPLREKVFKFTEAAIDKIKSKVNSTNLPSDGSNPFSTFQSLSVHIWRHVTQARNLKPEDITVFTVFADCRKRVDPPMPESYFGNLIQAIFTGTAAGLLLMNPPEFGAGVIQKAIVSHDAAAIDQRNKEWESAPKIFQFKDAGMNCVAVGSSPRFKVYDVDFGWGKPESVRSGCNNRFDGMMYLYQGKDGGRSIDVEISLEEEAMARLEKDKEFLMEN 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 498968 500826 + CmaCh16G001100.1 Cma16g00110 310708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00110 456 Coils Coil 436 456 - -
Cma16g00110 456 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 22 452 - -
Cma16g00110 456 Gene3D - 16 221 IPR023213 -
Cma16g00110 456 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 22 452 - -
Cma16g00110 456 Pfam Transferase family 17 452 - -
Cma16g00110 456 Gene3D - 225 449 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00110 K19747 DCR; BAHD acyltransferase [EC:2.3.1.-] - csv:101214239 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00365 Cma-Chr3:4264946 Cma16g00110 Cma-Chr16:498968 9.95E-88 dispersed
Cma04g02917 Cma-Chr4:19284609 Cma16g00110 Cma-Chr16:498968 3.51E-74 dispersed
Cma06g00244 Cma-Chr6:1224725 Cma16g00110 Cma-Chr16:498968 3.18E-84 dispersed
Cma14g00082 Cma-Chr14:379507 Cma16g00110 Cma-Chr16:498968 9.88E-85 dispersed
Cma15g00122 Cma-Chr15:574179 Cma16g00110 Cma-Chr16:498968 4.96E-75 dispersed
Cma16g00110 Cma-Chr16:498968 Cma17g00903 Cma-Chr17:6827140 1.34E-49 dispersed
Cma16g00109 Cma-Chr16:491986 Cma16g00110 Cma-Chr16:498968 2.30E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g732 . . . . . . . . Cmo16g00121 . . . . . Sed07g1011 . Cpe14g00096 Bhi01g01274 Tan01g0219 Cmetu06g1581 . Hepe07g0139 Mch10g0139 . . . . . . . . . . . . Lsi05g01210 . . Cme06g01021 . . . . . . . . . . . Cma16g00110 . . . . . . . . . . . . Cla05g00898 Cam05g0982 Cec05g0987 Cco05g0985 Clacu05g0970 Cmu05g0927 Cre05g1011 . Csa03g01733 Chy06g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008051 3 1 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00110 Cma_Chr16 FPKM 0.357695 0.622109 3.036762 3.442884 116.997017 123.227173 105.64782 0.448959 0.336015 0.340273