Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00114 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTTAAGAAGAAAGCGAGCAAGGAAAGTTTCATTGATTCATTACACCGTAAGTTTAAGAATCCACCTGAAGGGAAAGTGAACTGCAGATCAGGAAGTTCTCGTAGACGTGGTGGTGACACTATATCTGAGAAGGGGTCTAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCTAGATGTCAAAGTTTTGCTGAAAGATCACGTTCTCACAAACTTCCACTTCCAGATTTGCACCGCGTGGGTATAAGTCGCACAGATTCTGGGATTGGTGTGACAGCAAAATCTAAATTAGAGAGAAGTTCCAAGACATCTTCATTCCTACCCCTCCCTAGACCTGCATGTATTCGAAGTAGGCCAGGGCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTCTGGTGAGTCCTTGAGTGATAGTGATGATCCCAACGATTCACGACAACGTAGTCCTCGGGCAACAGACTTTAACATTGGGGCTAGAACTGTGATAGCTTCTACTGAACCTAGTGCAACTGTCAAAGATCAGTCTCCTACTGTCGTGCAAATACATTTAAAAGAGGGGAAGAAAGCGGAAAATGTTCTTTTTCCTCATAAAAGTGCTTCAATACCCAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGTGCTCCTGATAGTTCTATGTCTAGTCCCTCCAGAAGTCCTATGAGGGTATTTAGCACTGAGCAAGTCGTGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGGTGGATCTGGCCATTGTTCGAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCAGTACCTAGTTCTAGAATGACTAGCCCCGGCCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACGCCTATTCATCCTAGAGCAGGAGCTCTACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCACCGTTTTCACATTCAAATTCCGCAGTGACATCTCCTACAGTTCCTAGGAGTCCAGGAAGGACAGAGAATCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTGCTGGGTAGGGGAACATTTGGGCACGTATATGTTGGTTTTAATAGCGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCCAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGCGGCATCCCAACATCGTGCAGTATTATGGTTCGGAAACAGTGGGTGACAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTACAAGAATATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAACTGCTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGACGTGTTAAGTTGGCGGACTTTGGGATGGCAAAGCATATCACAGGCCAATCATGTCCACTATCATTGAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCTGTTGATATTTGGAGTCTTGGATGTACCGTTCTGGAGATGGCTACTACGAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCGGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCACTTCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCCTTTGTCAAATATGCTGCGCCTGTAGAGAGGCCTATTTTGAGCTCTGAACCTTCTGATACAACTCCTGGGGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTGTGGACTCTGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAATCTGTTCTTCATGCCAGTGAAATTAATATTCCCAGAAACATATCATGCCCTGTTTCACCAATTGGAAGCCCTCTTTTGCACTCGCGATCACCTCATACCAGTGGAAGAATGTCTCCTTCACCCATATCAAGTCCACGAACCACTTCGGGCTCATCCACACCTTTGACAGGATGTAGTGGTGCAATTCCTTACAACCACTTGAAACAAGCTATATACTTGCAAGATGGATTTGGAAGCAAGCCAAAGTCCTTAAATAGCACTCCGTACAGCAGCTGTATATCCTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATATTCTCGGAAATGATACCAGAAAATGATATCTTGGGAAAGCAGGTCGGACGGCCTGCTTATGGTGAATTGTATGATGGACAGCAGGTCTTGGCTGACCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACACCTCTCTTGATTTGAGTCCTACCCCCTCGACGTCTAGCCGCATGAATGGTATCTGA 2691 45.19 MPSWWGKSSSKEVKKKASKESFIDSLHRKFKNPPEGKVNCRSGSSRRRGGDTISEKGSKSPLSRSPSPSKEVSRCQSFAERSRSHKLPLPDLHRVGISRTDSGIGVTAKSKLERSSKTSSFLPLPRPACIRSRPGPADLDGDLVTGSVSGESLSDSDDPNDSRQRSPRATDFNIGARTVIASTEPSATVKDQSPTVVQIHLKEGKKAENVLFPHKSASIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVVNAAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGALPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPTVPRSPGRTENPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQLLSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSLKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPLHRPTAAQLLEHPFVKYAAPVERPILSSEPSDTTPGVTNGVKILGIGQSRTTSVDSDSRLAVHSSRVSKSVLHASEINIPRNISCPVSPIGSPLLHSRSPHTSGRMSPSPISSPRTTSGSSTPLTGCSGAIPYNHLKQAIYLQDGFGSKPKSLNSTPYSSCISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNTSLDLSPTPSTSSRMNGI 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 522963 528716 + CmaCh16G001140.1 Cma16g00114 310712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00114 896 MobiDBLite consensus disorder prediction 741 777 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 371 403 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 103 122 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 313 340 - -
Cma16g00114 896 CDD STKc_MEKK1_plant 409 666 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 363 412 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 877 896 - -
Cma16g00114 896 Gene3D Transferase(Phosphotransferase) domain 1 408 685 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 286 340 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 76 92 - -
Cma16g00114 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 813 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 16 54 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 16 172 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 56 75 - -
Cma16g00114 896 MobiDBLite consensus disorder prediction 746 777 - -
Cma16g00114 896 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00114 896 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00114 896 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cma16g00114 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 813 - -
Cma16g00114 896 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00114 896 SUPERFAMILY Protein kinase-like (PK-like) 408 749 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00114 Cma18g01256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00991 Cma-Chr3:6986502 Cma16g00114 Cma-Chr16:522963 5.63E-114 dispersed
Cma05g00206 Cma-Chr5:874311 Cma16g00114 Cma-Chr16:522963 3.82E-109 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma16g00114 Cma-Chr16:522963 1.12E-107 dispersed
Cma20g00149 Cma-Chr20:737241 Cma16g00114 Cma-Chr16:522963 5.26E-35 dispersed
Cma16g00114 Cma-Chr16:522963 Cma18g01256 Cma-Chr18:9793275 0 wgd
Cma16g00114 Cma-Chr16:522963 Cma02g01071 Cma-Chr2:6378437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69176 PF00069 Pkinase 2.30E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00114 K20717 - csv:101214961 1522.68