Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00118 ATGGAGTCTTTGTGGAAACTTCTATATTTGCTGGAACCTGCACCTGTCACTCTCATTGTGACTGCAGTGGCTGTTACATTTGGATCAGCTTTCCGGGCCCTAAATTATGGGAAGGAAATGGAGCGAAACCGTGACTTTTCAGAAGCTTCCATTACCTTAGACAGATCCCAAGCACTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCCGTGTCCCAACTTCTTACTGCATTCACAGCAGTTGCTTCGGTTTCATCCCTCTTCTTCTGTTTATCTCCTTACATGGCCTGTTTAAAGTCTCAGTTTGGATTGGCTGATCCTTACGTATCAAGGTGTTGTTCCAAGTCATTTACACGAATTCAAGGGTTATTGTTGTTGGCATGTTTTGGTTTAGTTGCAGCATGGCTTGTTTCTGGGCATTGGATATTGAACAATTTGTTGGGAATTTCAATATGTGTTGCATTTGTCAGCCATGTACGTCTCCCTAATGTTAAAATATGTGCGATGCTCCTCGTTTGTCTCTTTGTATATGATATTTTCTGGGTCTTCTTCTCTGAGAGATTCTTTGGAGCTAATGTAATGGTATCTGTCGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCTAATAGTCTGAGTCTTCCTGGTCTGCAATTGATAACTAAGAAGCTGGAGTTGCCCGTCAAGATAGTTTTTCCAAGGAACTTGCTTGGTGGAGTCATTCCAGGAAAAAATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTAGTTTTGACCATCGGAAGAGTAGGGATACAGTTAATCTCTTAGATATGCGCGCAAGGGGCCACAAGTACATTTGGTATGCCCTGCCTGGTTATGCCATTGGGCTGGTGACCGCTCTAGCAGCTGGTGTTTTGACTCACTCGCCTCAACCTGCCCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCCATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGGCCTTTGCCGAACCCCAATGATAAAATAGTTTGGAGCTTCGTATCAATGGGAACCTCTGTTCAGGTGACGCCTCTTTGCGGCGTGTACAATGAAAATCCTTTATCCTATTTGGTCTCCGTTGACGGCTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTCTATCCAGGGTGGCATCGACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGCGCCCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTATATTCCACTGAACCCGTGTATCGATTGGGCCTTCTTACAATGTATGATCAGTTTATAGCGAGGAAGCAAGTATCGGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGTTGTAACCAGGCTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCACCTCATGTGGCTGGGCATTTATTGGGGGGAACCCTATGGAAGATAACTAAAGATGGAGAAGATGTTATATATGCTGTTGATTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATAACGGATGCTTATAATGCTCTAAATAATCAGCCTTACAGGCGTCAGAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAGCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTAGAATGGTACTGGGAAGAGGAAAGTTTAAATTTTCCCATTTTCTTTTTAACTTACGTCGCATCTAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATTCAATAGCAAAGTCTTTTGAACACACACGGAACAACGCCTTTCTTCTCAAGCATGTCACCCTTCTAATAAACAAAAGTGAACTTGATAATGCTCCAGATGGACCAAAGGTTGTTCTAGCATCAATGGCTAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGAGTGGGCAACGGATGCCAAAAATCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGAACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTCGTTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGGAGGAACAATCTAAAGCATCACATGGAACTGATAACGATACTGGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGTTGGTTCACATGGAGGTGCATACCGAGACATATTTATTGATGGTTTTGTTCCTCCTTCAACAAGCGTTTCTCCAATGTTTCCCTTTTATGAAAACACTTCCGCATGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGACATGGACCAATCAGCGCCGCATGGTGGTGTGGACGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCAAAAGTTGTATCTAACGAATTGACAGTCCAAGTTAAATGCTCATTGCATTACATGGATTTCGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTCTTGGTGCATGGAACTGCAGAGGCCACTGAGCATATTAAACAACATTGCCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATCTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGCAATGTGCTGTTTAAGAAGCTAGGAGATTATGAAATCTCGTGGCTTGATGCTGATGTAGGAAAGACCGAGAATGGAACGTTGTCTTTACTTCCCCTCTCAAAGGCCGCTTTGCCTCATAAATCTGTTCTTGTTGGGGATCTAAAAATGGCTGACTTCAAACAATTTCTTTCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTTACCCTACGCAAGGTTTCAGATGCACGTCAGAAGCTTCATACCACAAATGAATGCATATTTGCTTGTGATGGTGTTGTTTGGCTAGTACCATTTTCATGGTTTGCTTCTAAGCATAAACGTAGTATATTCAATTTATGCAGGGTGGTGGTTCTGGTACTCAACAAGTTGTCATCGAAGGACCCTTATGTGAAGATTATTACAAAATTCGGGAGCTTTTGTATTCACAATTTTATTTGCTATACATATGAAACTGAAAATAATTGTTGTTACTTTTACAATAGGGAAGGATTTTTCATGGCTTCCACTCCTCTTACGTGTTCACCGAGCTCTCTCCAGCTTCGGCTCGCTCTGAATAGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCGAGAGTGACGAAATTGGATCCTCGGCTCCGCGTGATCTCCCGCCCTATTGTTCATAATGGCGTGATAATCGAGAGAGAAAATGGACTGCGTCGCAGTGGAGTTTCTTTTGCTGAGTCGGAGTCGACTACTGATGGATTCTCTGGGTGA 3738 42.56 MESLWKLLYLLEPAPVTLIVTAVAVTFGSAFRALNYGKEMERNRDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLSPYMACLKSQFGLADPYVSRCCSKSFTRIQGLLLLACFGLVAAWLVSGHWILNNLLGISICVAFVSHVRLPNVKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKNATDFMMLGLGDMAIPAMFLALVLSFDHRKSRDTVNLLDMRARGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPLPNPNDKIVWSFVSMGTSVQVTPLCGVYNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNFPIFFLTYVASSTIDYIKSFLEWMSDSIAKSFEHTRNNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVEWATDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELVAYEEEQNRKKEEALKASLLKEEQSKASHGTDNDTGDPMIIDASSNVAPDVVGSHGGAYRDIFIDGFVPPSTSVSPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAPHGGVDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHIKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEISWLDADVGKTENGTLSLLPLSKAALPHKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRKVSDARQKLHTTNECIFACDGVVWLVPFSWFASKHKRSIFNLCRVVVLVLNKLSSKDPYVKIITKFGSFCIHNFICYTYETENNCCYFYNREGFFMASTPLTCSPSSLQLRLALNSKNCGKFPSVLVRARVTKLDPRLRVISRPIVHNGVIIERENGLRRSGVSFAESESTTDGFSG 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 546752 559499 - CmaCh16G001180.1 Cma16g00118 310716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00118 1245 SMART Lactamase_B_5a 388 593 IPR001279 -
Cma16g00118 1245 CDD CPSF2-like_MBL-fold 379 574 IPR035639 -
Cma16g00118 1245 SUPERFAMILY Metallo-hydrolase/oxidoreductase 376 972 IPR036866 -
Cma16g00118 1245 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 903 955 IPR011108 -
Cma16g00118 1245 SMART Beta_Casp_2 613 736 IPR022712 -
Cma16g00118 1245 Gene3D - 378 628 IPR036866 -
Cma16g00118 1245 Coils Coil 763 783 - -
Cma16g00118 1245 Pfam Signal peptide peptidase 50 356 IPR007369 GO:0004190|GO:0016021
Cma16g00118 1245 Pfam Beta-Casp domain 613 736 IPR022712 -
Cma16g00118 1245 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 372 1076 IPR027075 GO:0005847|GO:0006378|GO:0006379
Cma16g00118 1245 SMART psh_8 49 347 IPR006639 GO:0004190|GO:0016021
Cma16g00118 1245 Pfam Metallo-beta-lactamase superfamily domain 393 568 IPR001279 -
Cma16g00118 1245 Pfam Cleavage and polyadenylation factor 2 C-terminal 1014 1072 IPR025069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00118 K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 - csv:101215673 1355.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01853 Cma-Chr4:9397326 Cma16g00118 Cma-Chr16:546752 1.38E-32 dispersed
Cma16g00118 Cma-Chr16:546752 Cma18g01252 Cma-Chr18:9766061 1.95E-30 dispersed
Cma15g01234 Cma-Chr15:7815763 Cma16g00118 Cma-Chr16:546752 3.26E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g706 . . . . . . . . . . . . . . Sed07g1024 . . Bhi01g01305 Tan01g0239 Cmetu06g0283 . Hepe07g0147 . . . . . . . . . . . . . . . . Cme06g01010 . . . . . . . . . . . Cma16g00118 . Car16g00108 . . . . . . . . . . . . . . . . . . Csa03g01722 Chy06g00954 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00118 Cma_Chr16 FPKM 12.060594 12.520902 13.55119 12.245514 18.464096 16.131771 18.527233 14.656358 13.738606 16.196981