Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00121 ATGAATCTTGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCGGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAACGCCTCTTCCATCGGCGCCTTCTGTTTAGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGGTGGTGGGTGGTGCAACGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGCCGAAGAGGATCAACGCGTTTGATGAACAAATGGGAAGACTTCTCTGGCATCCTCTCCAACGACGCCTCCCTTAACCCAGATTTTTATAATTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCGTTTGGAGGAAATGCCTTGTTTGACAATGGGACATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGATCTTCTACCAAGAGGGTTGGGGACAGCAAGGAAGGCTCTGCTCTCTGGTTGCTCTGCTGGAGGTCTAGCAACTTTTCTGCATTGTGAGAATTTCTCCAAGTATTTGCCAAGGAATGCCAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGGGATATAGGTTTAAATCACACCATGAGGAACTTTTATAGGGATCTTGTGGCTCTGCAGGGGATGCAGCAAAATCTGAATGAAGACTGCACAGCCGCCTCTTACTTTCCAGAATTGTGTATATTCCCTCAATATTCCTTGAAGTACATAACAACACCATTTTTCGTTCTGAATTCAGCCTACGATGTTTTCCAATTCCATCACGGATTGGTGCCACCATCTGCTGATTTACGTGGGCATTGGAACCACTGCAAACTCAACCCAGCAGAATGTAGTGAACAACAGATTCAGGTACTGCAAGGTCTAAGAATCAGTATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGCTTTGCTCACTGCCAAAGTGAGTCACAAGACACATGGTTTGGAGAGGACTCCCCAACAATAGACGACAAGACAATAGCAGAAGCAGTGGGAGATTGGTACTTTAGCAGGAGGAACACAAAGGAGATTGACTGTGCTTATCCATGCGACTCAACTTGCCATAATATTATACCATGA 1194 46.57 MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMNKWEDFSGILSNDASLNPDFYNWNRVKLRYCDGASFGGNALFDNGTSLLYFKGQKIWESIILDLLPRGLGTARKALLSGCSAGGLATFLHCENFSKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYRDLVALQGMQQNLNEDCTAASYFPELCIFPQYSLKYITTPFFVLNSAYDVFQFHHGLVPPSADLRGHWNHCKLNPAECSEQQIQVLQGLRISMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFGEDSPTIDDKTIAEAVGDWYFSRRNTKEIDCAYPCDSTCHNIIP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 561081 565050 + CmaCh16G001210.1 Cma16g00121 310719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00121 397 Pfam Pectinacetylesterase 28 377 IPR004963 GO:0016787
Cma16g00121 397 PANTHER PECTIN ACETYLESTERASE 9 27 397 - -
Cma16g00121 397 PANTHER NOTUM-RELATED 27 397 IPR004963 GO:0016787
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00121 Cma18g01251 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01184 Cma-Chr11:6960985 Cma16g00121 Cma-Chr16:561081 5.88E-145 dispersed
Cma16g00121 Cma-Chr16:561081 Cma16g00513 Cma-Chr16:2635616 5.63E-135 dispersed
Cma07g00994 Cma-Chr7:5119967 Cma16g00121 Cma-Chr16:561081 1.35E-142 transposed
Cma16g00121 Cma-Chr16:561081 Cma18g01251 Cma-Chr18:9760140 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00121 K19882 - csv:101216160 737.643