Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00124 ATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGCAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGCAGAATCGAACTCAACCAGCGACCCAAATAAACCCCACAAGAAGAGTTTTAAGAAACACCCTCTTAGAGTGACTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAGCCTCTTCAAGATGGAGGAACTAAATTCGCCAGTTGTTTTATTTGTAACGAAAGTGGACACTTGAGCAAAAACTGTCCGAAGAACACTCATGGGATCTATCCTAAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGGTGGGGCTTATGATGGTAACAAATCATCTGGATATGTGGAAATGCATAGACGACCAGAGACGAGGCGTGTGAGCGGCGATGATCTCGAGGATGATTTCAACATCGACGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAGAGTTGTGCAGTTCATGGATTGA 801 44.69 MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPHKKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFNIDEDHLQMKDAKVEKKKGPRVVQFMD 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 569503 572178 + CmaCh16G001240.1 Cma16g00124 310722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00124 266 Pfam Zinc knuckle 103 119 IPR025836 -
Cma16g00124 266 Pfam Zinc knuckle 184 199 IPR025836 -
Cma16g00124 266 ProSiteProfiles Zinc finger CCHC-type profile. 158 173 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SUPERFAMILY Retrovirus zinc finger-like domains 74 121 IPR036875 GO:0003676|GO:0008270
Cma16g00124 266 PANTHER OS04G0555800 PROTEIN 1 265 - -
Cma16g00124 266 MobiDBLite consensus disorder prediction 8 32 - -
Cma16g00124 266 ProSiteProfiles Zinc finger CCHC-type profile. 131 146 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 Gene3D - 127 154 - -
Cma16g00124 266 Gene3D - 155 212 - -
Cma16g00124 266 Gene3D - 75 126 - -
Cma16g00124 266 Pfam Zinc knuckle 158 173 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 Pfam Zinc knuckle 130 146 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SMART c2hcfinal6 157 173 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SMART c2hcfinal6 130 146 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SMART c2hcfinal6 79 95 IPR001878 GO:0003676|GO:0008270
Cma16g00124 266 SUPERFAMILY Retrovirus zinc finger-like domains 124 175 IPR036875 GO:0003676|GO:0008270
Cma16g00124 266 MobiDBLite consensus disorder prediction 1 71 - -
Cma16g00124 266 ProSiteProfiles Zinc finger CCHC-type profile. 185 200 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00124 - - - cpep:111810346 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00124 Cma18g01248 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00124 Cma-Chr16:569503 Cma16g01239 Cma-Chr16:9367876 1.48E-07 dispersed
Cma16g00124 Cma-Chr16:569503 Cma18g01248 Cma-Chr18:9739710 4.59E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00124 Cma_Chr16 FPKM 2.616761 4.347756 0.634959 0.735503 4.578093 4.06024 4.169328 7.257162 7.217026 6.856748