Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00130 ATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCATCTGTTTCTTCTTCCTCCTCCTCCGCCTTAGCTCCGCCGACCCAACCGTTTTCACCGCCTAAGATATCAGCAACAGTTACTTTCTCCCCTTCCAAGCGTCTCATTTCTTCTGCACTCGCTTCTCAGTTAACGCCACCCAAATCCTCTAAACGCCCGAAACTCTCTCCTCATACCCATAACCCTCTGCCTTCCGTCTCCAATCCCGCACTTCACAAAAGATTCCTCGAGAAGTTCCTTCAACCCATTGAAAACTCCTTTGAATCTTCTAATCAAAACCCCAAAGCCCCAACGGGCGGTGATGCCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTACAGATTTTTTGGCCAAGATGCTGAAATAGCAGCTCGTGTTTTGGGCATTTATGCCCATTTGGATCGTAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGATATAAGGTGGGTGTTGTCAAGCAAACTGAAACCGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGCAGGGGACTATCGGCTTTGTATACTAAAGCAACATTGGAGGCAGTCCAGAATTTAGGGGGAGCTGAGGAGGGATGTGGGGGAGAGAGTAATTACTTGTTCTGTGTAGTTGAAAAGAGCATGTTGGTGGATAATTTGGACAGTAGAATCGAATATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTCATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTGCTGAGCTTCTTCTTGGGGATCCCATATCAAAGGCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGACGTCTTTGTATGAAAACATTGACAAAGACAACTTAGCAGCTGATCATCACGACCCTGATACAGTGTTGGCTGGAAGAAAAAGTGATCGCATAGCAATTAAGGAAATAATGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTGACCATTCGTTACTTAAAGCAATTTGGTTTAGAAAGAATTGTGTCCTTGGGGTCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTTGAGATAACACATCCTTTATGTGAAAGAGACATGATAATTGCTCGTCAAGAGGCCGTTTCCGAGATTGCTGCAGCTATGGTATCTACAAAAGTATCTCAAAATATCAGAGAGTCAGAAGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCAGTGTTAACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACTGCAGCCCCGTCAGAGGATGATGGTTCCGATATTTCGGTCTCTGGCCTGAGTTTTCGATTTTCCGTAACTACTGGTCTGAAGGTTATTCAAGCTATTTTATATGCGGGGAAACAGCTTCAGCAGTTTCACATTGATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCCTCCTCTGGTTTGATTAGCATTGCTGCAAAACTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACCTTCCTAACCTGATGATCATCAATAATGACCAATTTCCGAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCATATACCGAAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACGCATTTGATTGAGTTGGCCTTAGATGTAAAGGTACCCTCAAATTGGGTGAAGATCAATAGTACAAAGAAAACTATAAGATATCACCCACCGGAAGTACTGGCTGCCTTAGACGAGCTATCATTGGCAAATGAGGAGCTCATGGTAGCATCTCGGGAAGCTTGGGATGGCTTTCTAAGTGGATTCAGCAGATATTATGCAGAGTTTCAATCTGCTGTTCAAGCACTGGCTTCCATTGACTGTCTGTATTCGTTAGCTATTCTCTCGAGACATAAGAACTATGTTCGTCCAGAGTTTGTACATGATGATGAACCTGCTCAGATAGTTATATGTTCTGGACGCCATCCGGTTTTGGAGAGTACAGTACAAGGCAATTTTGTCCCGAATGACACGAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGAGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTCGGTTCCTATGTACCAGCATTCTCCGCAAAGCTTCACGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCACGTTCCTTGGTCATAATTGACGAGCTTGGGAGAGGAACAAGCACTCACGACGGCGTGGCCATTGCATATGCAGCTTTGCAAAATCTTCTCCACCACAAGAAATGTTTGGTCCTCTTCGTTACCCATTACCCTAAAGTTGCTGATATTACAAAGGAATTCCCAGCATCTGCAGGGGTATACCATGTCTCATATCTGACTTCACACGAAAGGCCAAGCTTCTCAGGCCCAAAATCCGCTCAGGATGTGATTTACCTATATAAGCTCGTTCCTGGAATTGCGGAGAGCAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTACCATGTATTGCACGAGCCACAGAAATGGGGGTATGGTTAGAAGAAATAGTAACCAGAAGAGCACAACGTAAAACCAGAGAAATGCATTTACAGGAAGCATCAGGCAAGGGATTGGAATTGGAAAGCTCCGAGTGCTTCCTTGAAGATAGAATTGATGCTTATGAGGAATTCTTTCTGTTCTTGAAAGCTACAATATGCTCTCCTGATGATATGGGGAAACATTTCCTTCAATTTTCCCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGTAGACGTTCCCGGAACCTCTTGCGGTTTCAATCCTCTGCTTCACTCGCAAAAAGTTATCGTAGTCGTCCACTTTGCACGGTGGTACATTTGAATCGAGCTGCGTTTCAAACTTGCAAATGGGTCCAATGTACCAATCGAAAGATCCAGAGAAGTGGGTCGTAG 3435 44.02 MGKQKQQVISRFFAPKPKSPSVSSSSSSALAPPTQPFSPPKISATVTFSPSKRLISSALASQLTPPKSSKRPKLSPHTHNPLPSVSNPALHKRFLEKFLQPIENSFESSNQNPKAPTGGDAKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDRNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAVQNLGGAEEGCGGESNYLFCVVEKSMLVDNLDSRIEYGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKATEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVTSLYENIDKDNLAADHHDPDTVLAGRKSDRIAIKEIMNMPNLALQALALTIRYLKQFGLERIVSLGSSFRPFSCKMEMTLSGNTLTQLEITHPLCERDMIIARQEAVSEIAAAMVSTKVSQNIRESEEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEDDGSDISVSGLSFRFSVTTGLKVIQAILYAGKQLQQFHIDEEDDNYSSESMIGSKLLRKLILSASSSGLISIAAKLLSTISKEAADQGDLPNLMIINNDQFPKVARARKEAQSAREKLDSLITIYRKQLGMRKLEFTSVSGTTHLIELALDVKVPSNWVKINSTKKTIRYHPPEVLAALDELSLANEELMVASREAWDGFLSGFSRYYAEFQSAVQALASIDCLYSLAILSRHKNYVRPEFVHDDEPAQIVICSGRHPVLESTVQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSYVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALQNLLHHKKCLVLFVTHYPKVADITKEFPASAGVYHVSYLTSHERPSFSGPKSAQDVIYLYKLVPGIAESSFGFKVAQLAQIPLPCIARATEMGVWLEEIVTRRAQRKTREMHLQEASGKGLELESSECFLEDRIDAYEEFFLFLKATICSPDDMGKHFLQFSQARSMAMDLLGSRRSRNLLRFQSSASLAKSYRSRPLCTVVHLNRAAFQTCKWVQCTNRKIQRSGS 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 582197 588990 + CmaCh16G001300.1 Cma16g00130 310728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00130 1144 Gene3D DNA repair protein MutS, domain I 116 243 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Coils Coil 636 656 - -
Cma16g00130 1144 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 449 1052 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma16g00130 1144 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 101 449 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cma16g00130 1144 SUPERFAMILY DNA repair protein MutS, domain II 248 452 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 SMART mutATP5 812 1011 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Pfam MutS domain III 438 760 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 MobiDBLite consensus disorder prediction 57 71 - -
Cma16g00130 1144 MobiDBLite consensus disorder prediction 17 32 - -
Cma16g00130 1144 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 449 1052 - -
Cma16g00130 1144 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 101 449 - -
Cma16g00130 1144 Pfam MutS domain V 815 1009 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 SUPERFAMILY DNA repair protein MutS, domain III 438 765 IPR036187 -
Cma16g00130 1144 SMART DNAend 426 795 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 MobiDBLite consensus disorder prediction 1 45 - -
Cma16g00130 1144 Pfam MutS domain I 124 234 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Gene3D MutS, connector domain 247 435 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1010 IPR027417 -
Cma16g00130 1144 MobiDBLite consensus disorder prediction 57 87 - -
Cma16g00130 1144 ProSitePatterns DNA mismatch repair proteins mutS family signature. 893 909 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Pfam MutS domain II 273 419 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Gene3D - 768 1046 IPR027417 -
Cma16g00130 1144 Gene3D - 610 736 - -
Cma16g00130 1144 SUPERFAMILY DNA repair protein MutS, domain I 119 232 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cma16g00130 1144 Gene3D - 436 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00130 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 1706.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00466 Cma-Chr8:2624218 Cma16g00130 Cma-Chr16:582197 7.90E-67 dispersed
Cma10g00249 Cma-Chr10:1112237 Cma16g00130 Cma-Chr16:582197 4.25E-50 dispersed
Cma16g00130 Cma-Chr16:582197 Cma16g00923 Cma-Chr16:7012154 8.80E-37 dispersed
Cma16g00130 Cma-Chr16:582197 Cma05g01335 Cma-Chr5:10098570 1.84E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00130 Cma_Chr16 FPKM 0.460392 0.839034 2.305094 2.491114 3.43121 2.633398 2.761585 2.101145 1.947113 2.067197