Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00131 ATGATGAACCAGAATTCAGAAAACTGGCTACCACTCGGCTGGACTGTGAAGGTCAAAGTGAGGAAGAGTGGCAAGAAGGATAAGTATTATTTTGAACCCTCAAGTCAAATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTCAAAACTGCTGCAATCAATCATCCTGAATCTGAAGAGAGCAGAACCGTGGAGCAACCAGAGAACAATGTGGAAGTTAAGAAGACTATAGCAAAAGGGTTACCTCCTGGATGGATCAGAGAAATCAGAGTAACGAGGACTGCTAACAGAATAAGAAGAGATTCATTTTACATTAATCCTGTAAATGGAAATGCGCTTCGCTCGTTGAGGGATGTGCATCGGTATCTAACAAGTGGAAAGGTGAGCCGATTAGCTTATAAATCTAGGAGCCAGAGCAACAGCAACAGCAACATTGAGTTTCAGCACGATGATATCTCTTCATCTTCTGTCTCCAAGAAAGAGATGCTAGCGATTGGCAAAGCAAAGAGACAGATTATATGGAGCGACAACTCACCGGAACCGAGTGAAATAGCAGATGATGAAGCTATTTTTCCAAAGGCTGCAAGTGTTGGAGAAAGAATGCCCTTTTTGAAACCTAATTTAACTCACGGGAGGATAGGCGCTAAGTTGCGCTGCTCAACTCCCGAAGAGGCAAAAGAACGTGAGCAATCAGAAGGAAAGAATAGTTTTTCCGAATTTGTGTCAACTCCTGATAAATCCATCCGACACAAGTGTACTAGTGAGAATGGGGCAACAAAGATTGAGAGTAGAAAGAGACAAAGGAAAAGTAAAGACATAAACTTGCCATGCCGTGCTTCAAAGCGACTTGCAGGGCTCCAAGCTGAGCCAGTGCTTGAAGCTAAAACTGATCGCCGAGCGTGTTCGGTTGCATGTGAAGAGTCTGATAAGCAAGTAGCCAGTACAACTAAGTGGCCATCTCAATGTCCTGAAAATCCTGATGTCAAGCATGAAACAAGGAGCATAATTGACCCTCCTAAAATTGACACAAATCTAGATTCAAGTAGAAAAGAACATTCTGCTGTTGACTTGTCCATTCTGCCTGAGAAGGTTAAGAAGATGAAATCTGAAGATGCATATGAGCAGCAGCAGCCGAAATGCAATTCCTTTCTGCCTTCAGAGGACGTTCTGGAAAAGCATGTAGGGCAGGTGGAAAGTGAAGATGAGGCTGGTGTGAAAAAACAAGGCCCTCTTCTTAAACTGCCTATGGAGGACTTACTGACTGATCCTTGCATTGCATTTGCAGTTAAAACGCTTACTGGAGACGTTTTTGACGCATCCATAAGCTCAGAAGCATCAGAAGCATCACTGATGCCAAACAATATTGATCGTCCTTTCGTGGCCTTTACTCCAAGTGAGAGGAGAAACTTGGGATCAGAAAACAAGCTTAATGAGAAGTCGCCATCTCCAGAACTTCCTGTTACTCGAGTTGGGAAAGTCGAAAATAACAACATTGTTGAAAAGCTAGAATCGACTCTGGAGTTGCCAGTTGGGGAAATGTGGGCGGACCCTTGTATAGAATTTGCTATTAAAACTCTAACTGGTGAGATCCCACTTGTTAACAATCCAGATATTGAGGATTACTTTCACCAATTTGCCCCCTCAAAAACCAAAGGAACTAACGCAAATGCCTCGAATCATGTTGGTTCGTATTAG 1698 42.93 MMNQNSENWLPLGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAINHPESEESRTVEQPENNVEVKKTIAKGLPPGWIREIRVTRTANRIRRDSFYINPVNGNALRSLRDVHRYLTSGKVSRLAYKSRSQSNSNSNIEFQHDDISSSSVSKKEMLAIGKAKRQIIWSDNSPEPSEIADDEAIFPKAASVGERMPFLKPNLTHGRIGAKLRCSTPEEAKEREQSEGKNSFSEFVSTPDKSIRHKCTSENGATKIESRKRQRKSKDINLPCRASKRLAGLQAEPVLEAKTDRRACSVACEESDKQVASTTKWPSQCPENPDVKHETRSIIDPPKIDTNLDSSRKEHSAVDLSILPEKVKKMKSEDAYEQQQPKCNSFLPSEDVLEKHVGQVESEDEAGVKKQGPLLKLPMEDLLTDPCIAFAVKTLTGDVFDASISSEASEASLMPNNIDRPFVAFTPSERRNLGSENKLNEKSPSPELPVTRVGKVENNNIVEKLESTLELPVGEMWADPCIEFAIKTLTGEIPLVNNPDIEDYFHQFAPSKTKGTNANASNHVGSY 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 589236 592312 + CmaCh16G001310.1 Cma16g00131 310729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00131 565 Gene3D - 2 55 - -
Cma16g00131 565 SUPERFAMILY DNA-binding domain 79 130 IPR016177 GO:0003677
Cma16g00131 565 SUPERFAMILY DNA-binding domain 7 54 IPR016177 GO:0003677
Cma16g00131 565 MobiDBLite consensus disorder prediction 313 333 - -
Cma16g00131 565 PANTHER OS04G0193200 PROTEIN 1 558 IPR038945 -
Cma16g00131 565 Gene3D - 56 172 - -
Cma16g00131 565 MobiDBLite consensus disorder prediction 245 277 - -
Cma16g00131 565 CDD MBD 82 132 - -
Cma16g00131 565 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 70 IPR001739 GO:0003677
Cma16g00131 565 Pfam Methyl-CpG binding domain 76 128 IPR001739 GO:0003677
Cma16g00131 565 Pfam Methyl-CpG binding domain 6 53 IPR001739 GO:0003677
Cma16g00131 565 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 72 153 IPR001739 GO:0003677
Cma16g00131 565 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13 1 558 - -
Cma16g00131 565 MobiDBLite consensus disorder prediction 218 277 - -
Cma16g00131 565 MobiDBLite consensus disorder prediction 218 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00131 - - - bhj:120079861 812.757
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00131 Cma18g01241 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00126 Cma-Chr13:866942 Cma16g00131 Cma-Chr16:589236 4.53E-08 dispersed
Cma16g00131 Cma-Chr16:589236 Cma18g01241 Cma-Chr18:9720370 0 wgd
Cma16g00131 Cma-Chr16:589236 Cma02g01475 Cma-Chr2:8453143 2.36E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g651 . . Bda05g00063 . Bpe03g00292 . . . Cmo16g00136 Cmo18g01264 . . . . Sed01g3910 . Cpe14g00111 Bhi01g01334 Tan01g0265 Cmetu09g1530 . Hepe07g0168 Mch10g0165 . Cla01g00286 Cam01g0298 Cec01g0291 Cco01g0304 Clacu01g0297 Cmu01g0284 Cre09g2225 . . . . Lsi05g01239 Csa05g00308 Chy09g01198 . Blo07g00416 . . . . . . . . . . Cma16g00131 Cma18g01241 . Car18g01146 Cpe09g00096 . Bhi12g00219 . . . . . . Cla05g00869 Cam05g0957 Cec05g0962 Cco05g0962 Clacu05g0943 Cmu05g0901 Cre05g0985 . Csa03g01700 Chy06g00936 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004458 1 4 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 2 2 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00131 Cma_Chr16 FPKM 4.680212 5.117897 3.365185 3.814535 13.626295 14.114905 15.209227 6.408393 7.189719 6.324899