Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00137 ATGGGTATGGAGTTGACACGCTTCCTTCTCATTTTCATCGTCTACTTCGAGCTCTGCATTTTGAGCTCCAATGGTATTATAGACCAGAATGAGATTATTATCGACAGGGAAAGCTTGATTTCTTTCAAAGCTTCGCTAGAGACCTCCGAAATTCTGCCATGGAACTCATCACTTCCTCACTGCTTTTGGACTGGAGTTTCATGCCGACTCGGTCGAGTTACACAGCTCTCTCTTTCATCTCTTTCGCTCAAAGGCCAACTCTCTCGGTCGCTTTTCAACATTTCGAGTCTCTCTGTTCTTGACCTTTCAAACAACTTTCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGATAATCAGCTTTCCGGTGATCTCCCAATCGAGCTCACCGAGTTGACTCAGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAACTCCCGCCGGAGCTTGGAAATTTGAAGCTGCTACGGACCCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTCCCGCCCCACATCGGAAACCTGACGAGGATTTTATCACTGGACCTCGGTAACAATCTTTTATCAGGTTCACTCCCATTGAATATCTTTACTGACCTTAAATCTTTAACGTCTCTGGACATTTCAAACAATTCGTTTTCGGGTTCAATCCCACCTGAAATTGGAAACCTACAGCATTTGACTGATCTTTATATCGGCATTAACCACTTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCTTCTTGTTCTTTAACTGGTCCATTACCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGACCTTTCATACAACCCACTTGGGTGTTCTATCCCGAAATCGATTGGTGAGTTACAGAACTTAACTATATTGAATCTGGTTTACACTCAGCTTAATGGTTCTATTCCTGCTGAGCTCGGGAGGTGCAGAAATTTGAAAACATTGATGCTTTCATTCAACTTTCTATCTGGGGTGTTGCCACAAGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAAGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTTGATTCTATTTTACTCTCGAGTAATCATCTCATGGGGGAAATCCCTCCTGAGATTGGAAATTGCTCGATGCTTAATCACCTGAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGCAATTTCCTCTCGGGTACGATTGACGATACATTTGTGCTGTGTAGAAACCTTACGCAGCTGGTTTTGGTAGACAATCAGATTGTTGGGGCAATACCAGAGTACTTCTCAAACCTTTCCTTAATGGTAATCAACCTTGACTCTAATAATTTTACCGGTTCTTTACCTAGAAATATATGGAACTCAGTGGATTTGATGGAGTTTTCTGCCGCAAATAACCTGTTGGAGGGTCATCTCCCTTCAGAAATTGGCTATGCAGCTTCACTTGAGAGGCTTGTTCTCAGCAGCAATAGGTTGACAGGCGGTATACCAGATGAGATTGGAAATCTCACAGCTCTTTCAGTTCTAAATTTGAATTCCAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGCAGATTGCACTTCACTTACCACGTTGGACCTTGGAAACAATAGTCTAAATGGGTTGATTCCTGAAAGACTTGCTAACCTTACTGAATTACAGTGTCTAGTTCTGTCACACAACATGTTATCTGGAGCCATACCTTCCAAGCCCTCTGCTTATTTTCGACAGGTTACTATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTCGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAATTGTGTTGTTGTAGTTGATCTTTTGCTGAATAATAATATACTTTCTGGAGAGATTCCTAGATCTCTCTCTCACTTATCGAACCTGACAACCTTGGATTTGTCTAGCAATATGCTTACTGGTCCTATTCCCACAGAGATCGGCAATGCTCTCAAGCTCCAGGGCCTGTATCTATGGAATAATCACCTGGTGGGTACAATCCCCGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTGACTGGTAATAAAATATCTGGTTCAGTTCCAAGAACTCTTGGTGATCTGAAAGCTCTCACTCATTTGGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAACATGTTGAATCTTGTCGGGCTTTATGTACAGGAGAACAAGCTTTCTGGTCAGGTTGTTGAACTTTTCCCTAGTTCCATGACATGGAAGATCGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTCCTTCCACGAACATTGGGCAACCTTTCATACTTGACAACGTTGGATCTTCATGGAAATAAGTTCACAGGGCAAATCCCTTCAGATTTTGAGAATCTTATGCAACTTGAATACTTAGATGTTTCAAATAACAAGTTCTCAGGAGAAATTCCAGAGAAAATATGCAGCCTCGTCAATATGGTTTACCTGAATATGGCAGAAAACAGTCTGGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAGAAGTTCACTTGTGGGTAACAAGGGCCTTTGTGGAAGAATCATGGGTTTGAATTGCCGGATCAAAATCTTAGAGAGATCAGCAGCATTGAATGCTTGGAGCGTTGCTGGGATTATCATTGTTAGTGTTCTTATCGTTCTAACCATCACATTCGCCATGCGGAGATGGATCATTAGAAGCCAGAGAGAGAACGATCCAGAGGAAATGGAGGAAAGCAAATTAAAATGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGCAGATCGAGAGAGCCTTTAAGCATCAATGTAGCCACGTTCGAGCAACCCCTTCTGAAATTAACTTTGGCTGATATTCTCGAAGCAACCAATAACTTCTGTAAGACAAACATCATTGGAGATGGAGGATTCGGGACAGTGTACAAGGCCACATTACCTGATGGAAAAATTGTTGCCGTGAAGAAACTAAGCGAAGCAAAAACACAGGGGCACAGAGAATTCATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCACTACTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTCCTAGTCTATGAATATATGGTGAATGGTAGCTTGGATCTTTGGCTAAGAAACCGAATCGGTACCCTCGAAGTCCTTAACTGGGAGACTCGATTTAAAGTCGCTTCAGGCGCAGCTCGTGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTCGAACCAAAAGTTGCCGACTTCGGGTTGGCTAGACTGATCAGTGCTTGTGAGACTCATGTCACAACTGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGAGGTCTACTACAAAGGGGGACGTTTATAGCTATGGTGTAATCCTACTGGAATTGGTAACTGGGAAGGAACCAACAGGACCCGACTTTAAAGAGATTGAGGGCGGAAACCTGGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGGCAGGCTGCAGACGTTCTTGACGCCACAGTACTGAATGGTGATTCCAAGCATATGATGCTTCAAACCCTTCAGATTGCTTGTGTTTGCTTATCAGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGTGTAA 3906 42.93 MGMELTRFLLIFIVYFELCILSSNGIIDQNEIIIDRESLISFKASLETSEILPWNSSLPHCFWTGVSCRLGRVTQLSLSSLSLKGQLSRSLFNISSLSVLDLSNNFLYGSIPPQISNLRSLKVLALGDNQLSGDLPIELTELTQLENLKLGTNLFTGKLPPELGNLKLLRTLDLSSNAFVGNVPPHIGNLTRILSLDLGNNLLSGSLPLNIFTDLKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKSIGELQNLTILNLVYTQLNGSIPAELGRCRNLKTLMLSFNFLSGVLPQELSELPMLTFSAEKNQLSGPLPSWLGKWDHVDSILLSSNHLMGEIPPEIGNCSMLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVLCRNLTQLVLVDNQIVGAIPEYFSNLSLMVINLDSNNFTGSLPRNIWNSVDLMEFSAANNLLEGHLPSEIGYAASLERLVLSSNRLTGGIPDEIGNLTALSVLNLNSNLLEGTIPAMLADCTSLTTLDLGNNSLNGLIPERLANLTELQCLVLSHNMLSGAIPSKPSAYFRQVTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNILSGEIPRSLSHLSNLTTLDLSSNMLTGPIPTEIGNALKLQGLYLWNNHLVGTIPESFSHLSSLVKLNLTGNKISGSVPRTLGDLKALTHLDLSSNELDGDLPSSLSNMLNLVGLYVQENKLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGQIPSDFENLMQLEYLDVSNNKFSGEIPEKICSLVNMVYLNMAENSLEGPIPRSGICQNLSRSSLVGNKGLCGRIMGLNCRIKILERSAALNAWSVAGIIIVSVLIVLTITFAMRRWIIRSQRENDPEEMEESKLKCFIDPNLYFLSSSSRSREPLSINVATFEQPLLKLTLADILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRIGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSYGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNGDSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDV 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 601086 604991 - CmaCh16G001370.1 Cma16g00137 310735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00137 1301 Gene3D Phosphorylase Kinase; domain 1 986 1098 - -
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 365 564 IPR032675 -
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 34 141 IPR032675 -
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 565 623 IPR032675 -
Cma16g00137 1301 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515
Cma16g00137 1301 Pfam Leucine rich repeat 708 766 IPR001611 GO:0005515
Cma16g00137 1301 Pfam Leucine rich repeat 806 864 IPR001611 GO:0005515
Cma16g00137 1301 SMART LRR_sd22_2 851 877 - -
Cma16g00137 1301 SMART LRR_sd22_2 454 480 - -
Cma16g00137 1301 SMART LRR_sd22_2 287 313 - -
Cma16g00137 1301 SMART LRR_sd22_2 681 707 - -
Cma16g00137 1301 SMART LRR_sd22_2 215 241 - -
Cma16g00137 1301 SMART LRR_sd22_2 94 120 - -
Cma16g00137 1301 SMART LRR_sd22_2 753 779 - -
Cma16g00137 1301 SMART LRR_sd22_2 573 599 - -
Cma16g00137 1301 SMART serkin_6 1023 1295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00137 1301 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 805 893 - -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 957 1300 - -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 134 343 - -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 372 451 - -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 452 787 - -
Cma16g00137 1301 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 61 136 - -
Cma16g00137 1301 Pfam Protein kinase domain 1026 1293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00137 1301 SUPERFAMILY L domain-like 57 363 - -
Cma16g00137 1301 Gene3D Transferase(Phosphotransferase) domain 1 1099 1300 - -
Cma16g00137 1301 SUPERFAMILY L domain-like 367 619 - -
Cma16g00137 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1145 1157 IPR008271 GO:0004672|GO:0006468
Cma16g00137 1301 SUPERFAMILY L domain-like 627 914 - -
Cma16g00137 1301 PRINTS Leucine-rich repeat signature 576 589 - -
Cma16g00137 1301 PRINTS Leucine-rich repeat signature 681 694 - -
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 142 212 IPR032675 -
Cma16g00137 1301 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515
Cma16g00137 1301 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 372 451 - -
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 957 1300 - -
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 61 136 - -
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 805 893 - -
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 452 787 - -
Cma16g00137 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 134 343 - -
Cma16g00137 1301 ProSitePatterns Protein kinases ATP-binding region signature. 1029 1052 IPR017441 GO:0005524
Cma16g00137 1301 SMART LRR_typ_2 190 214 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 142 166 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 94 118 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 287 311 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 215 239 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 681 705 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 549 573 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 851 875 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 753 777 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 729 752 IPR003591 -
Cma16g00137 1301 SMART LRR_typ_2 827 850 IPR003591 -
Cma16g00137 1301 SUPERFAMILY Protein kinase-like (PK-like) 1004 1295 IPR011009 -
Cma16g00137 1301 ProSiteProfiles Protein kinase domain profile. 1023 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 213 364 IPR032675 -
Cma16g00137 1301 Gene3D Ribonuclease Inhibitor 624 923 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00487 Cma-Chr13:5234509 Cma16g00137 Cma-Chr16:601086 1.41E-06 dispersed
Cma15g00583 Cma-Chr15:2745465 Cma16g00137 Cma-Chr16:601086 8.83E-76 dispersed
Cma15g00877 Cma-Chr15:4444583 Cma16g00137 Cma-Chr16:601086 1.68E-56 dispersed
Cma16g00137 Cma-Chr16:601086 Cma13g00836 Cma-Chr13:6965714 2.81E-32 dispersed
Cma16g00404 Cma-Chr16:2006173 Cma16g00137 Cma-Chr16:601086 2.39E-51 dispersed
Cma18g01168 Cma-Chr18:9362452 Cma16g00137 Cma-Chr16:601086 7.85E-11 dispersed
Cma01g00237 Cma-Chr1:1089881 Cma16g00137 Cma-Chr16:601086 1.35E-84 transposed
Cma04g00977 Cma-Chr4:5034444 Cma16g00137 Cma-Chr16:601086 2.91E-07 transposed
Cma16g00137 Cma-Chr16:601086 Cma18g01235 Cma-Chr18:9702739 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69178 PF00069 Pkinase 2.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00137 - - csv:101215443 2240.69