Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00140 ATGCCTATTCCCAGTTCAATTCCCAGCTCCTCTGAATTCTCCACTTCCACAAGGAAAATGGATGGTTATGGTGAAGTGTGTCTGCTTGGAGATGGCTTTGATCCGAGCGGAGCTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATTGATGGTGCTTTATCTGGGGACGATCAAGACGCTAACGACGAACAACAACCAAAAGGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGCCCTCATCCTGATGATAAACAAAGAAGTGAACTTAGTAGGAGGCTGTGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTGCTAATCCAACATGCAATACTTGTGGTGGCCCTTCAATTCCTGGTCATCTATCATTTGAAGAACACCATCTTAGAATTGAGAATGCCAGATTAAGAGAGAAACTGCACCGGTTATATACTGTCACCAACAAGTTCCTGGGCTGGCCAGTTTCTTCACCCTTTGGCAATCAGGGCTCCTCACCAAGTTCTGACTCTTGCTTGGAACTGTCTGTTGGAAGAAGTGGAATCGGAAGGTCGAGTACCGTTTCTGATTCTATGGGGCTGGGAAACGGACATTTCGGTGCTGGCCCTGTGATGCCTATTAGTAAGCCCGAAATAGGCGTCTCAGGCAATGATATACCACTTGACAGAACAATATATGTGGATTTTGCTTTGGCAGCTATGAATGAATTAGTTGAGATGGCTCAAACGGATGCCCCCCTTTGGATCAGAAGTCGGGATGGTGGTAGCAGAGAGACGTTGAACCTTGATGAATATTCAAGGACTTTTCCTTCTTCAGCTGGCATGAAGCACATTAATTGGACAACAGAGGCCACCAGAGATTCTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACGTTGATGGATGCAAACCGGTGGGCAGAAATGTTTCCTTGCTTGATTGCTAGAGCTACGACAATCGACGTGATAACTAGTGGCATGTGTGGAACTAGAAACGGTGCATTACAATTGATGAATGCTGAACTCCGAGTACTTTCCCCGCTGGTTCCCGTGCGTACGCTTAAGTTCCTTCGCTTCTGCAGGCAGCTTGCTGATGGTTTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCGGATTCGAACACGTTTCTCGGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGGAAGATATGCCTAATGGTTTCTCCAAGGTAACATGGGTGGAGCATACAGAATATGATGAGACTGTTATACACCAGCTTTACCGCCAGTTAATTAGTTCAGGCATCGGTTTCGGTTCACAACGGTGGCTTGCTAACCTTCAAAGACAATGCGAATGTTTGGCGATTCTTATGTCTTCTACTATTCCCACTGAAGATCCTGCAGGAATATCTCCGGGCGGTAGAAGAAGTATGCTGAAGCTATCGCAGCGTATGGTGGATAAATTCTGTTCGGGGCTTTGTAGTTCAAGTTTACATAAGTGGGACAAGCTGGTTGTTGGTAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGAGCCTGGCGAGCCACCGGGTATCGTGTTGAGTGCTGCAACTTCAGTTTGGATGCCTGTTACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGATCACTTTCGGAGTGAGTGGGATATTTTATCCAACAGTAGGCCAATGCTAGAGATGGTTCGCATCTCGAAAGGCCAGGATGCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAAAGCTAATGAGAGCACCATGTTCATATTGCAAGAGACTTGGACTGATATATCAGGCTCACTGGTTGTTTACACTCCAGTCGACACAGCCTCGGTTAGTTTGATGATGCGTGGAGGAGATTCCGCTTATGTATCGCTATTACCATCAGGATTTGCAATTCTCCCCAATGCTACAAACAACGACAAAGACGCATCAATGAAGTCAGGCATGAACAGTGGGCATGATAATGGATGTCTGCTCACAGTAGCATTCCAGATTCTGGTGAATAGTCTTCCAACGGCCAAACTCACGGTCGAGTCGGTTGAGACGGTTAACAATCTCATTTTTTGCACCATTCGAAAGATCAAAACTGCCCTTCAAGTATCATAA 2295 45.58 MPIPSSIPSSSEFSTSTRKMDGYGEVCLLGDGFDPSGAVRMREDEYDSRSGSDNIDGALSGDDQDANDEQQPKGKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLCLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAIANPTCNTCGGPSIPGHLSFEEHHLRIENARLREKLHRLYTVTNKFLGWPVSSPFGNQGSSPSSDSCLELSVGRSGIGRSSTVSDSMGLGNGHFGAGPVMPISKPEIGVSGNDIPLDRTIYVDFALAAMNELVEMAQTDAPLWIRSRDGGSRETLNLDEYSRTFPSSAGMKHINWTTEATRDSTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVITSGMCGTRNGALQLMNAELRVLSPLVPVRTLKFLRFCRQLADGLWAVVDVSIGEGSDSNTFLGCRRLPSGCVVEDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGIGFGSQRWLANLQRQCECLAILMSSTIPTEDPAGISPGGRRSMLKLSQRMVDKFCSGLCSSSLHKWDKLVVGNISEDVKVMARKSINEPGEPPGIVLSAATSVWMPVTQQRLFAFLQDDHFRSEWDILSNSRPMLEMVRISKGQDADNRVSLLRANPMKANESTMFILQETWTDISGSLVVYTPVDTASVSLMMRGGDSAYVSLLPSGFAILPNATNNDKDASMKSGMNSGHDNGCLLTVAFQILVNSLPTAKLTVESVETVNNLIFCTIRKIKTALQVS 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 612841 617178 - CmaCh16G001400.1 Cma16g00140 310738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00140 764 Coils Coil 125 157 - -
Cma16g00140 764 MobiDBLite consensus disorder prediction 37 51 - -
Cma16g00140 764 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Cma16g00140 764 CDD homeodomain 75 131 IPR001356 GO:0003677
Cma16g00140 764 SMART HOX_1 73 135 IPR001356 GO:0003677
Cma16g00140 764 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Cma16g00140 764 SUPERFAMILY Homeodomain-like 59 131 IPR009057 -
Cma16g00140 764 Pfam Homeodomain 75 129 IPR001356 GO:0003677
Cma16g00140 764 ProSiteProfiles START domain profile. 271 505 IPR002913 GO:0008289
Cma16g00140 764 CDD START_ArGLABRA2_like 280 501 - -
Cma16g00140 764 Pfam START domain 281 502 IPR002913 GO:0008289
Cma16g00140 764 SUPERFAMILY Bet v1-like 530 758 - -
Cma16g00140 764 SUPERFAMILY Bet v1-like 272 502 - -
Cma16g00140 764 SMART START_1 280 502 IPR002913 GO:0008289
Cma16g00140 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 30 762 - -
Cma16g00140 764 MobiDBLite consensus disorder prediction 66 80 - -
Cma16g00140 764 MobiDBLite consensus disorder prediction 31 80 - -
Cma16g00140 764 Gene3D - 60 147 - -
Cma16g00140 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 762 IPR042160 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00140 Cma18g01234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00140 Cma-Chr16:612841 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma14g02014 Cma-Chr14:14093630 Cma16g00140 Cma-Chr16:612841 0 wgd
Cma16g00140 Cma-Chr16:612841 Cma18g01234 Cma-Chr18:9694311 0 wgd
Cma16g00140 Cma-Chr16:612841 Cma08g00920 Cma-Chr8:5742070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36506 PF01852 START 9.50E-48 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00140 K09338 - csv:101218216 1308.12