Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00142 ATGGAGGTGAATGATCGTTTCAGTTTCAAATTGCATTTGAAGTTGATTTTGGTTACACAACACAAAAGCAATGAACTCAGAATTGAGGCACAGCCTCAGAGCTGCTCAACTCAGCTGAGCAACCTGAATGGCTGTGCACCATTTGTGGTGCCAGGTGCCAACAGTAGAGAGAAGCGCGTTGCTCAGAAGCTGCTCACATCACAATTCCCATTTCCCAAATCCAACCTCACTTCTTCAACTTCTTTATACTTCTTCTTCTACTTCTACCTCTGCCTCTGCCTCTGCTTCTGCCTCTGCCTCTGCCTCTGCCCCAAATTAAAACTCTCTCTTCTGATCCATTCTTTGATATTTTCCCAGCCATGCTTCTTCTACTTCTCCCCACCTCCTTCTCCTAGCTTTCCACTTCCTTCCATGGGCTTTCTCCGGCGACTTTTCCGTCCAAAAAAGCCCCCTCTTGACCCACCCGACTCCACTCAAGGCCTCAACAAGAAGAAGAACAGGCGCTGGGGCTTCGCCAAGTCCGCCCACAACGATCAATCTCGCCCTTACACGACGCAATCCCAGCCCAATGCGTTTGGCCCGTCCTCTTCCTACACCGAACCTCTCGATGCCAACAAGCACGCGATTGCGGTCGCCGCCGCCACCGCTGCCGTCGCCGAGGCAGCTTTAGCCGCCGCCCATGCCGCTGCCGAGGTTGTTCGTCTCACCAGCAGCAGCACCACTCACGCTAATGCTAACCGCCGTTGGATGGAGGAGGCGGCTGCCGTTAAAATCCAGTCCGCCTTTCGGGGTTATTTGGCAAGGCGGGCACTTAGGGCACTAAAGGCATTAGTAAGGCTTCAAGCTTTGGTGAGAGGTCACATTGTGAGAAAGCAAATGGCTGACATGCTAAGGCGAATGCAGACACTGGTTAGATTGCAATCTCGAGCTTGTGCTGGTCGCTCGAACTTATCAGATTCTTTGCATTCTACCAGCAAGTCCTCGCTCTCTCATATCCGTGTCCAAGCAACTCCCAATGGAAATGATCATCAATTCTGTGCCCATCTTAGTAATAAATTTGACAACTCTGCACTTCTAAAGAGATGTGGTTCAAATTCAAACTTAAAGGATGTCAGTGTTGTGGATGGAGCGCCAGTCGGGTCAAGCTGGTTAGACCGTTGGATGGAAGAAAACTTGTGGAATAATCGAGATTTGGCTCTAAAAAACATTCATGCTGTGGATGAGAAAACAGACAAAATCCTTGAAGTTGAGACATGGAAACCTCATTTGAAGTCTCAAGGAAACATCAGCAGCTTTAAGAACTCTCAAATGGCTCCAGATTTTAAAAACCAGAGCTTTACGACAATCGATTCCCCATCGAAACATTCATCAAAGGCTGCAAAACCAGTTTCGAGTCTTTCCTCAGGGGAAGCATCGTTGAGCTCTTTAAAATACCCTCTTGGAAAATATGAAGCAGCTCCAAGAACAGGAGAAAATAGCCCTCAAGTGCATTCTGCCAACTCCAGGCGTGGTAATGGCGCAAAAAGAGCTACATTTTCGCCGACAAGAAGTGAGTATGCATGGGGATATTTCAGCGGCTATGCAGGTTATCCAAACTATATGGCCAACACAGAATCGTCCAAAGCAAAAGTCAGGTCACAAAGTGCTCCAAGACAGAGGCTGGAGTTAGAGAAAATCGGATCGAACAAGCGGCATTCCCAGGTATCTTGGGATGCATGGAGCTTTTCAAACAGCGGGATCGAACCCAATTCATCAAACAATGCCAATTCTGTAGCTGATCGCATGACTAAGTTTGCAAGTACCAAATCAAGATAA 1815 47.99 MEVNDRFSFKLHLKLILVTQHKSNELRIEAQPQSCSTQLSNLNGCAPFVVPGANSREKRVAQKLLTSQFPFPKSNLTSSTSLYFFFYFYLCLCLCFCLCLCLCPKLKLSLLIHSLIFSQPCFFYFSPPPSPSFPLPSMGFLRRLFRPKKPPLDPPDSTQGLNKKKNRRWGFAKSAHNDQSRPYTTQSQPNAFGPSSSYTEPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSSTTHANANRRWMEEAAAVKIQSAFRGYLARRALRALKALVRLQALVRGHIVRKQMADMLRRMQTLVRLQSRACAGRSNLSDSLHSTSKSSLSHIRVQATPNGNDHQFCAHLSNKFDNSALLKRCGSNSNLKDVSVVDGAPVGSSWLDRWMEENLWNNRDLALKNIHAVDEKTDKILEVETWKPHLKSQGNISSFKNSQMAPDFKNQSFTTIDSPSKHSSKAAKPVSSLSSGEASLSSLKYPLGKYEAAPRTGENSPQVHSANSRRGNGAKRATFSPTRSEYAWGYFSGYAGYPNYMANTESSKAKVRSQSAPRQRLELEKIGSNKRHSQVSWDAWSFSNSGIEPNSSNNANSVADRMTKFASTKSR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 624748 629151 - CmaCh16G001420.1 Cma16g00142 310740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00142 604 MobiDBLite consensus disorder prediction 484 511 - -
Cma16g00142 604 ProSiteProfiles IQ motif profile. 275 302 IPR000048 GO:0005515
Cma16g00142 604 Pfam Protein of unknown function (DUF4005) 493 579 IPR025064 -
Cma16g00142 604 MobiDBLite consensus disorder prediction 542 561 - -
Cma16g00142 604 Pfam IQ calmodulin-binding motif 253 272 IPR000048 GO:0005515
Cma16g00142 604 Pfam IQ calmodulin-binding motif 275 292 IPR000048 GO:0005515
Cma16g00142 604 Gene3D - 250 303 - -
Cma16g00142 604 SMART iq_5 250 272 IPR000048 GO:0005515
Cma16g00142 604 SMART iq_5 273 294 IPR000048 GO:0005515
Cma16g00142 604 MobiDBLite consensus disorder prediction 579 604 - -
Cma16g00142 604 PANTHER IQ-DOMAIN 5-RELATED 138 602 - -
Cma16g00142 604 MobiDBLite consensus disorder prediction 177 197 - -
Cma16g00142 604 MobiDBLite consensus disorder prediction 491 511 - -
Cma16g00142 604 MobiDBLite consensus disorder prediction 443 466 - -
Cma16g00142 604 ProSiteProfiles IQ motif profile. 251 279 IPR000048 GO:0005515
Cma16g00142 604 MobiDBLite consensus disorder prediction 175 197 - -
Cma16g00142 604 PANTHER CALMODULIN-BINDING PROTEIN 138 602 - -
Cma16g00142 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 297 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00142 - - - csv:101216161 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00142 Cma-Chr16:624748 Cma08g00741 Cma-Chr8:4454707 5.13E-26 dispersed
Cma15g01201 Cma-Chr15:7615369 Cma16g00142 Cma-Chr16:624748 3.44E-07 wgd
Cma16g00142 Cma-Chr16:624748 Cma18g01232 Cma-Chr18:9687683 6.83E-09 wgd
Cma16g00142 Cma-Chr16:624748 Cma02g01479 Cma-Chr2:8470456 1.47E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006767 3 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00142 Cma_Chr16 FPKM 21.68294 25.217999 8.54229 8.364441 30.132519 26.131187 29.08577 6.027002 6.865726 6.259654