Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00145 ATGGCATCTTCTCGTCTGGCTGGAGGATTAGTTCAGTCTCCATCAAGTTCAGGGATTTTCTACCAAGGGGAAGGGCAGTCCCCAGCTATTGTTAATTCTCACTTGGGCCAATCATTTGCAAATTCATCAAATTCAATCCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACAGATGCAAACTCTGCCCTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGTTTGCCTGCATCGCCCATGTCATTCAATTCAAATAACATTAGTGTGTCAGGCTCCTCAGTTATTGATGGATCCTGCGTAGTGCAGCAAAATTCTCACCAGGACCAGAATATCCAACACGTGCAGCAACATACACATCAAGGTGCTTCACATGCCACATCTTTACCAACATCACAAATAGGCCAAGTATCATTTCCGATGGGTGCTAAACGTCAGGGATCTTTCATTCCAGATCCAAATAACTATTCTCAGGTGCAGAAGAAACCACGACTAGATATAAAGCAGGAAGATATACTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCTGTCACAAAACCGTAACTCACAATTACAAGCTTTATTTCAACAGCAAAGAATGCGGCAACAGCATCAAATTTTGCATTCTCTACCTCAGTACAGGGCTCAGTTTCAGCAGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAACAACAGCAAGCAATGCTGCCAGTATCACCCATGAATCGGCCTTCATATGATACTGGTGGTGTTTGTGCCCGTCGGCTGATGCAATATCTGTATCATCAGCGACAAAGACCTCCTGAGAATAGTATAGCCTACTGGAGAAAGTTTGTAACAGAGTATTACTCTCCTCGTGCGAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCACGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCATGGCAGTGCGACATCTGTGGTTCCAAATCAGGAAGGGGCTTTGAGGCTACATTTGAAGTGCTCCCGAGACTCAGTGAGATCAAATTTGGAAGTGGAGTTATTGATGAGTTTTTAATTCTGGACCGTCCTCAAGAAAGGAGATTATCTTCCGGAATTATGCTTTTAGAATATGCAAAAGCATTTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATAATATTCTCACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCACGTAGGTTGGTTGCATCTCAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAGCACAATAGCGGAAAGTGGGCCTGATGGTGTTTCTCAGAAAGATTTGCAGACGAATAGCAATATGGTGCTGGCAGCTGGTCGTCAGCTTGCAAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCCCTAAAAGATACGTGAGGTGTTTGCAGATATCGGAGGTTGTCAACAGTATGAAAGATCTTATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAATTATCCTAGACATGCCACTGCAGCCAAGCTCAAGATGCAAAAGATGCAGGAGATGGAACAGTTAGCAAGTATTCAAGGTCTTCCCACAACAGTAAATAAGCTGATGGCAATGCATCCTGAACATGATAACCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTGAGTGGTTCGGCACAAGCTGCTTTGGCAATGACTACGTACCAGAATATCCTCATGAGACAAAGCTCTATGAACTCCAATCCCAGCCCACATCAACAGGAGGCCTTGTCTTCTTTCAATAATTCCAACTATAATCCATCCCCTACACTCCAGGGGAATGCATTCTTGATGCCTGGATCCATACAGAACTCTGTTGGTAGCTTTTCAAGCGCCCAGCAAACCTTGCAAAAGCAATCGCAGCAGCTGCAACAGCATCCACCAAATGCTGGCTCCTTGGTCCAACAAAATTATCCTCAGACGATTCTAGGTAGCCAGGCCCTACAGCAACAGATGATCCAGGAGCTACTGCAGATGTCTAGTAACAGTATGAGTGGCGGTTTGCAACACCCACCCCTTACCGGACCAAATGCAAATAGAAGTTTGACAAGAAGGGGTACGGGTTTTGTGGGAAACACCTCAGTTGCAGCTGGGGCATCTGGAAATCTGTCTGGGAGCAATGTCCCTTGCCCTGGTCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCCGCTGGTAATAGTGGGTTCAATCAAAAGGCTTCTGATTTTCCGGAAGATCTTCATCTGCCAGAAAGTTTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAACGGGTTCCTTAACAATGACCTTGACGATGATTTGGGTTATGTCTGGAAGGCTTGA 2559 45.21 MASSRLAGGLVQSPSSSGIFYQGEGQSPAIVNSHLGQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSHQDQNIQHVQQHTHQGASHATSLPTSQIGQVSFPMGAKRQGSFIPDPNNYSQVQKKPRLDIKQEDILQQQVLQQLFQRQDSMLSQNRNSQLQALFQQQRMRQQHQILHSLPQYRAQFQQQQQQQIQLRQQLQQQQQAMLPVSPMNRPSYDTGGVCARRLMQYLYHQRQRPPENSIAYWRKFVTEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDEFLILDRPQERRLSSGIMLLEYAKAFQESVYEQLRVVREGQLRIIFSQDLKILSWEFCARRHEELLPRRLVASQVNQLVQVAQKCQSTIAESGPDGVSQKDLQTNSNMVLAAGRQLAKSLELQLLNDLGFPKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLKMQKMQEMEQLASIQGLPTTVNKLMAMHPEHDNHGINNHQMIGRGGLSGSAQAALAMTTYQNILMRQSSMNSNPSPHQQEALSSFNNSNYNPSPTLQGNAFLMPGSIQNSVGSFSSAQQTLQKQSQQLQQHPPNAGSLVQQNYPQTILGSQALQQQMIQELLQMSSNSMSGGLQHPPLTGPNANRSLTRRGTGFVGNTSVAAGASGNLSGSNVPCPGPSRSNSFKAASNSESSAGNSGFNQKASDFPEDLHLPESLVEDIGQDFPENGFLNNDLDDDLGYVWKA 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 635891 642799 - CmaCh16G001450.1 Cma16g00145 310743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00145 852 Coils Coil 253 276 - -
Cma16g00145 852 Pfam LIM-domain binding protein 297 557 IPR029005 -
Cma16g00145 852 MobiDBLite consensus disorder prediction 773 818 - -
Cma16g00145 852 MobiDBLite consensus disorder prediction 636 707 - -
Cma16g00145 852 MobiDBLite consensus disorder prediction 735 760 - -
Cma16g00145 852 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Cma16g00145 852 PANTHER LIM DOMAIN-BINDING PROTEIN 184 845 IPR029005 -
Cma16g00145 852 MobiDBLite consensus disorder prediction 773 811 - -
Cma16g00145 852 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 184 845 - -
Cma16g00145 852 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01411 Cma16g00145 CCT
Cma15g01411 Cma16g00145 ECH
Cma16g00145 Cma18g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01044 Cma-Chr2:6218305 Cma16g00145 Cma-Chr16:635891 0 dispersed
Cma15g01411 Cma-Chr15:8900528 Cma16g00145 Cma-Chr16:635891 0 dispersed
Cma16g00145 Cma-Chr16:635891 Cma18g01227 Cma-Chr18:9659453 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00145 - - csv:105434391 1335.86