Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00151 ATGGAATCTTTTTCAACTTTGTATGAAGACTACTTCTCCAGCTCCGAGAGTAGTGATTGCCGGCGGTTCATATTTTCCGAGAAGGAGCTTATGTTAGCGGCGAGCAATCCGAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCACCCGGTTTACAGAGGGGTCAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCCACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATGAAGCTTCGAGGTCGTTCTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCGGAGCCGGCATCTGCTGACGCCAGGGATATTCAGAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGGCCGGCCGAATCAGATGGGTCTTCTGTTGATGACTCAAGGACCGAAAATATGATGACGGCGGAGACGACGCCAGAAAACGTGTTGTACGTGGATGATGATGCAATTTTTGGGCTGCCGGGATTGTTGGAGGACATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGACTTTTATTCTGACGTGTCATTATGGAGCTACTAA 636 53.62 MESFSTLYEDYFSSSESSDCRRFIFSEKELMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMKLRGRSACLNFADSAWRLPEPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENMMTAETTPENVLYVDDDAIFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 665860 666495 + CmaCh16G001510.1 Cma16g00151 310749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00151 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Cma16g00151 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 211 IPR045277 GO:0003700
Cma16g00151 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cma16g00151 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Cma16g00151 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 14 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01047 Cma-Chr2:6235241 Cma16g00151 Cma-Chr16:665860 3.37E-76 dispersed
Cma02g01486 Cma-Chr2:8494391 Cma16g00151 Cma-Chr16:665860 5.34E-67 dispersed
Cma06g00454 Cma-Chr6:2105391 Cma16g00151 Cma-Chr16:665860 1.65E-39 dispersed
Cma14g00287 Cma-Chr14:1229251 Cma16g00151 Cma-Chr16:665860 2.72E-40 dispersed
Cma14g00288 Cma-Chr14:1234638 Cma16g00151 Cma-Chr16:665860 3.61E-36 dispersed
Cma16g00151 Cma-Chr16:665860 Cma05g00594 Cma-Chr5:2958701 1.89E-35 dispersed
Cma15g01197 Cma-Chr15:7581626 Cma16g00151 Cma-Chr16:665860 1.69E-51 wgd
Cma16g00151 Cma-Chr16:665860 Cma02g01485 Cma-Chr2:8491930 9.46E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36508 PF00847 AP2 5.30E-16 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00151 - K09286 csv:101220749 342.043