Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00151 | ATGGAATCTTTTTCAACTTTGTATGAAGACTACTTCTCCAGCTCCGAGAGTAGTGATTGCCGGCGGTTCATATTTTCCGAGAAGGAGCTTATGTTAGCGGCGAGCAATCCGAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCACCCGGTTTACAGAGGGGTCAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCCACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATGAAGCTTCGAGGTCGTTCTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCGGAGCCGGCATCTGCTGACGCCAGGGATATTCAGAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGGCCGGCCGAATCAGATGGGTCTTCTGTTGATGACTCAAGGACCGAAAATATGATGACGGCGGAGACGACGCCAGAAAACGTGTTGTACGTGGATGATGATGCAATTTTTGGGCTGCCGGGATTGTTGGAGGACATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGACTTTTATTCTGACGTGTCATTATGGAGCTACTAA | 636 | 53.62 | MESFSTLYEDYFSSSESSDCRRFIFSEKELMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMKLRGRSACLNFADSAWRLPEPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENMMTAETTPENVLYVDDDAIFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 665860 | 666495 | + | CmaCh16G001510.1 | Cma16g00151 | 310749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00151 | 211 | CDD | AP2 | 54 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | PRINTS | Ethylene responsive element binding protein signature | 54 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | PRINTS | Ethylene responsive element binding protein signature | 76 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 53 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | SMART | rav1_2 | 53 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | SUPERFAMILY | DNA-binding domain | 53 | 112 | IPR016177 | GO:0003677 | |
Cma16g00151 | 211 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 14 | 211 | IPR045277 | GO:0003700 | |
Cma16g00151 | 211 | Pfam | AP2 domain | 52 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | Gene3D | AP2/ERF domain | 53 | 111 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g00151 | 211 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 14 | 211 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01047 | Cma-Chr2:6235241 | Cma16g00151 | Cma-Chr16:665860 | 3.37E-76 | dispersed | |
Cma02g01486 | Cma-Chr2:8494391 | Cma16g00151 | Cma-Chr16:665860 | 5.34E-67 | dispersed | |
Cma06g00454 | Cma-Chr6:2105391 | Cma16g00151 | Cma-Chr16:665860 | 1.65E-39 | dispersed | |
Cma14g00287 | Cma-Chr14:1229251 | Cma16g00151 | Cma-Chr16:665860 | 2.72E-40 | dispersed | |
Cma14g00288 | Cma-Chr14:1234638 | Cma16g00151 | Cma-Chr16:665860 | 3.61E-36 | dispersed | |
Cma16g00151 | Cma-Chr16:665860 | Cma05g00594 | Cma-Chr5:2958701 | 1.89E-35 | dispersed | |
Cma15g01197 | Cma-Chr15:7581626 | Cma16g00151 | Cma-Chr16:665860 | 1.69E-51 | wgd | |
Cma16g00151 | Cma-Chr16:665860 | Cma02g01485 | Cma-Chr2:8491930 | 9.46E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36508 | PF00847 | AP2 | 5.30E-16 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00151 | - | K09286 | csv:101220749 | 342.043 |