Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00168 ATGCCGAGAGTGCGGTGCCGTAGAATAGAGATGCGACGATTAGAAACAGTACCGTCGAAGAAACGTGTTCGGAAGACGGACAGCGACGGTTCTCCGGAGATTTCATCTTCTTCGTCATCGGGGGAGGACGTGAAGACTGTAGAAGCTTCACCGTCGGTACCTCAGCCTGTGTTCGGGATGATGTCGGTGTCCGGAAGGTCACGTGAGATGGAGGATGCAGTATCGACGAGCTTATGCCTTCTAGGTCCAGGAAATTTCCGGCGGCGACCGGTGCATTTCTTCGCCGTCTATGATGGACACGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTAGTACAGGAGGAATTGGCGCGCGCGGTGAGTGGCGGCGGAGGAAGCAGTGCGGCGGAGGAGGCTAAGGTGGAGGAGGAGGCGACTTGGAAAAGAGTGATGCGGAGGAGCTTTGAGAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGAAGCGTCGGAGGCCAGTGTAGGTGCCATCCAATGGAGGTGGCTCTTGGCGGCTCCACAGCCGTCGTTGCCGTGCTCACCCCGGATCACATAATGGTCGCCAACTGCGGTGACTCACGCGCCGTCCTCTGCCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGAATCGAAGCCGCTGGAGGACGGGTGATTTTCATAAATGGAGCTCGGGTTGAAGGAATCCTGGCAACGTCCCGTGCAATAGGTGACAAATATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACTTTCACCAGAAGAGAATCAGATGACGAATGTTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTTTCAAGTGAGTTGGCTTGTGAGGTAACTCGAGAATGTCTCCAAGAAAGAACGGCCGCCGCTGTTGCTGCTACTACTACGATAGACCTCAACGCCGAGCCTCAAATTGAAGAAGGGGCTGGAACTTCATATCCTTCTCGAAGTTCACTGGCTGCTGCACTGCTTACTCGTCTTGCTTTGGGGCGGAGAAGCATGGACAACATCAGTGTTATAGTTATTTATCTAAAGAGGAGCTGA 1122 52.76 MPRVRCRRIEMRRLETVPSKKRVRKTDSDGSPEISSSSSSGEDVKTVEASPSVPQPVFGMMSVSGRSREMEDAVSTSLCLLGPGNFRRRPVHFFAVYDGHGGPHVAALCREKMHVLVQEELARAVSGGGGSSAAEEAKVEEEATWKRVMRRSFERMDEMALSTCACGSVGGQCRCHPMEVALGGSTAVVAVLTPDHIMVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFINGARVEGILATSRAIGDKYLKSVVISEPEITFTRRESDDECLILASDGLWDVLSSELACEVTRECLQERTAAAVAATTTIDLNAEPQIEEGAGTSYPSRSSLAAALLTRLALGRRSMDNISVIVIYLKRS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 732523 737854 - CmaCh16G001680.1 Cma16g00168 310766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00168 373 PANTHER ALPHABET, ISOFORM E-RELATED 26 372 - -
Cma16g00168 373 Gene3D - 50 373 IPR036457 -
Cma16g00168 373 ProSiteProfiles PPM-type phosphatase domain profile. 57 370 IPR001932 -
Cma16g00168 373 Coils Coil 372 373 - -
Cma16g00168 373 CDD PP2Cc 57 370 IPR001932 -
Cma16g00168 373 SMART PP2C_4 47 368 IPR001932 -
Cma16g00168 373 MobiDBLite consensus disorder prediction 30 46 - -
Cma16g00168 373 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 26 372 - -
Cma16g00168 373 MobiDBLite consensus disorder prediction 1 58 - -
Cma16g00168 373 Pfam Protein phosphatase 2C 58 327 IPR001932 -
Cma16g00168 373 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Cma16g00168 373 MobiDBLite consensus disorder prediction 1 29 - -
Cma16g00168 373 SUPERFAMILY PP2C-like 52 371 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00168 Cma18g01202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00168 Cma-Chr16:732523 Cma05g00420 Cma-Chr5:1893659 1.64E-73 dispersed
Cma16g00168 Cma-Chr16:732523 Cma18g01202 Cma-Chr18:9526783 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00168 K14497 - csv:101206634 543.117