Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00179 ATGGGTTTCTGGGGCATTGAAGTGAAACCAGGCAAACCGTACCCTTACCATTCTGATAACGTGCCGGGAAAACTCCGGATAACTCAGGCAACTTTGGGACCTGGCTCATCGAAAGAGAGAAGCATCATTCAGTGTTCTGTTGGTCAGAAGAGTCCAATTTTTTTGTGCTCTTTGATACCAAATAAGATTGAATCATGCCCCTTGAATCTTGAATTTAAGGAAGATGATTTGATAGCCTTCTCAGTTATTGGCCCACAAAGCATCCATCTCTCTGGTTATTTTGTAGCCAACGAGGGAAATTTCATCAGGGATGACTATGATTCTGATTCTTTTGGGGAAGACATCGCGGAAACAGATACCGAGGATTCATCAGAGTATGACACTGGAGATGAATATGATGATGAATTCATTGATGACGACGACGATGACTATCCTGGGATGTTCCCAACTTCGCCAGTTAACAAAAGTGGAGTTGTAATTGAGGAGATAGTGGATGATGAAAAATCAAATGATGCCAATGGTCAAGCTAAAGAAGTGAAGAGAACTAAGTCCAGCGACTCTGAAGATATTAGGAATTCTCAGCGTCAAGTTGTGCTGAAAAGGAATGTGGGAAAATCTATTTCAGAAAGTGAAGATGAAGATGGATTTCCAATTGCTACCAAAAGCAAGAGCAAAGCGAATATGCAGAAATTAGAACCAGAACAGGAACAAAAAGGTCCCAGTACTGGGAATGTGAAGGAGGCAAAAGCAAAAGATGACAATGATGCTTCTAGCTTGAAAAGAAAAGTTGAAAACGATGAGCAAGTTGATCATATGGAAAGTGATGTCAGGAAAAAGAAAAAGAAGCAGAAAAAGAAGGTAAAAGAAGTAAAAGCTCTGGAAACTGGTAATGATGGTAATATGGGGAGCGAAAAGCCACCAGCGGAAGTTGAGAGTGCAGCTGTTAATCCAACTTCTGATGGAGATGAGAATGGCAAAAAGCTATCTAAACAGAGGGATGCCTCGACTCACATGGACGTTGCTGATGGTGAAAATAAGAAGGAAGATAGGCAAAAAAAGAAGAGAAAGAAGGAGAAGAAGAGCAAGGAGACTGAAATTGGATCAAAATCTGATGAACTAACGAAGACGGCGGGAGATCAGAGTAAGTCAGCTTTGGGTTCAAAAGAGAAGGAAAAAGAATCCAAATCATCTCGAGTGAGAACTTTTGCTAATGGGTTGGTTATTGAGGAGGTAGCCATGGGTAAACCAGATGGCAAAAGAGCTTCACCTGGAAACCAGGTTAGTGTTCACTATATTGGGAAGCTAAAGAACGGCAAAATATTTGATAGTAATGTTGGAAGGGCACCATTCAAATTCCGCTTAGGTCTGGGACAGGTTATTAAGGGATGGGATGTCGGGGTTAATGGTATGCGAATTGGGGATAAAAGGAGATTGACAATCCCTCCATCAATGGGTTATGGGGCTGCGGGAGCTGGTGGGAAGATTCCGCCGAATTCTTGGCTTACTTTCGATGTTGAACTGGTTGGTGTCCGCTGA 1536 42.12 MGFWGIEVKPGKPYPYHSDNVPGKLRITQATLGPGSSKERSIIQCSVGQKSPIFLCSLIPNKIESCPLNLEFKEDDLIAFSVIGPQSIHLSGYFVANEGNFIRDDYDSDSFGEDIAETDTEDSSEYDTGDEYDDEFIDDDDDDYPGMFPTSPVNKSGVVIEEIVDDEKSNDANGQAKEVKRTKSSDSEDIRNSQRQVVLKRNVGKSISESEDEDGFPIATKSKSKANMQKLEPEQEQKGPSTGNVKEAKAKDDNDASSLKRKVENDEQVDHMESDVRKKKKKQKKKVKEVKALETGNDGNMGSEKPPAEVESAAVNPTSDGDENGKKLSKQRDASTHMDVADGENKKEDRQKKKRKKEKKSKETEIGSKSDELTKTAGDQSKSALGSKEKEKESKSSRVRTFANGLVIEEVAMGKPDGKRASPGNQVSVHYIGKLKNGKIFDSNVGRAPFKFRLGLGQVIKGWDVGVNGMRIGDKRRLTIPPSMGYGAAGAGGKIPPNSWLTFDVELVGVR 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 782370 788374 - CmaCh16G001790.1 Cma16g00179 310777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00179 511 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Cma16g00179 511 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 419 508 IPR001179 GO:0003755
Cma16g00179 511 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 235 - -
Cma16g00179 511 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 269 511 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 110 145 - -
Cma16g00179 511 SUPERFAMILY Nucleoplasmin-like core domain 3 93 IPR036824 -
Cma16g00179 511 Gene3D - 372 511 IPR046357 GO:0003755
Cma16g00179 511 MobiDBLite consensus disorder prediction 323 351 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 245 277 - -
Cma16g00179 511 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 424 511 IPR001179 GO:0003755
Cma16g00179 511 MobiDBLite consensus disorder prediction 108 399 - -
Cma16g00179 511 PIRSF FK506-bp_FPR3 48 316 IPR023566 GO:0003755
Cma16g00179 511 PIRSF FK506-bp_FPR3 1 43 IPR023566 GO:0003755
Cma16g00179 511 PIRSF FK506-bp_FPR3 242 511 IPR023566 GO:0003755
Cma16g00179 511 PANTHER PEPTIDYLPROLYL ISOMERASE 1 235 - -
Cma16g00179 511 PANTHER PEPTIDYLPROLYL ISOMERASE 269 511 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 160 195 - -
Cma16g00179 511 SUPERFAMILY FKBP-like 382 510 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 205 219 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 360 376 - -
Cma16g00179 511 MobiDBLite consensus disorder prediction 384 398 - -
Cma16g00179 511 Gene3D Nucleoplasmin core domain 1 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00179 Cma18g01193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02145 Cma-Chr14:14692019 Cma16g00179 Cma-Chr16:782370 5.60E-10 dispersed
Cma16g00179 Cma-Chr16:782370 Cma17g00030 Cma-Chr17:130190 2.42E-39 dispersed
Cma03g01506 Cma-Chr3:9382497 Cma16g00179 Cma-Chr16:782370 7.78E-19 transposed
Cma16g00179 Cma-Chr16:782370 Cma18g01193 Cma-Chr18:9461541 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00179 K14826 - csv:101208577 761.911