Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00213 ATGCTCTTCTCTTTTCCAAAGCCATCAAACTCTTCCCTTTTGGTTTCTAAGCTTCCAAGAACCACAGTTTTCCATCCAAACAAGATGACCCAGTTCCTCAATCTTGCTCTTGGAGTGGTTTTTGTTCTGGGTTTGGCTGTTGTTCTTCTCATCTTCTTGAACAGAAGGGGAAAGGGGAAGAACGGCGATGGATTCAATGACTTAGAGAGGAACCAGCAGAGTGTGAAAGGGGCGGAGGAGCGTGAAGACTTGCTGACATTTCAAGGTGGGCAGGACCTTACCATTTTGGATATCTTGGAAGCTCCTGGGGAAGTCATTGGCAAAGCCAACCATGGAACTCTGTATAAGGCTTATTTGCAAGGTAGCAGCACGGTGCGGCTGCTCAGGTTTCTGAGGCCTGTTTGCACTGCTGGGCATGATGATTTTGTCAGTGAAATTGAGTTTTTGGGTTCCATAAGACACCCAAATTTGGTGCCTCTTTTGGGGTTCTATTCAGGTCCAAGAACAGAGAAGCTTCTCATTCATCCATTCTACAGGCGAGGAAATCTAGCTCAGTTCATCAGAGATGGGAATGGTGACTCGCACCGATGGGGAGTAATAAACAAGATCTCGGTCGGTATAGCAAAAGGGTTGGATCATCTCCACACTGGCTTGCAAAAGCCAACAATCCATGGGAATCTACAGTCGAAAAACATTCTTTTGGATCGGAACTATGAACCGTATGTCTCAGATTTCGGTCTACATCTACTGTTGAATTCCTCTTCTGCTCAAGAGGTACTTGAAGGTTTAGCAGCTAATGGCTACAAAGCTCCTGAGGTGATCAAGATGAAGGATGCAACAGAGGAGACTGATGTTTATAGTTATGGGGTGATCTTACTCGAGCTACTTTCGGGGAAGGAACCGGTTAACGAAAAGCCAGCTTTCGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCAGTTCTTGGACATAGAATTGCAGATCTGTTCCATCCAGAAATACTTCTATATAGCAGCATTGACGGAAACAATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCAATGGCGTGTTGTTCGCCTTCGCCTGCTCTTAGGCCTAGTATGAAGCAAGTGCTTCAAAAGCTCAATGAAATCAGAACGTAA 1155 44.42 MLFSFPKPSNSSLLVSKLPRTTVFHPNKMTQFLNLALGVVFVLGLAVVLLIFLNRRGKGKNGDGFNDLERNQQSVKGAEEREDLLTFQGGQDLTILDILEAPGEVIGKANHGTLYKAYLQGSSTVRLLRFLRPVCTAGHDDFVSEIEFLGSIRHPNLVPLLGFYSGPRTEKLLIHPFYRRGNLAQFIRDGNGDSHRWGVINKISVGIAKGLDHLHTGLQKPTIHGNLQSKNILLDRNYEPYVSDFGLHLLLNSSSAQEVLEGLAANGYKAPEVIKMKDATEETDVYSYGVILLELLSGKEPVNEKPAFDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNNVTEEKILKFFQLAMACCSPSPALRPSMKQVLQKLNEIRT 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 967058 968414 - CmaCh16G002130.1 Cma16g00213 310811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00213 384 Gene3D Transferase(Phosphotransferase) domain 1 179 384 - -
Cma16g00213 384 SUPERFAMILY Protein kinase-like (PK-like) 103 380 IPR011009 -
Cma16g00213 384 Pfam Protein tyrosine and serine/threonine kinase 104 379 IPR001245 GO:0004672|GO:0006468
Cma16g00213 384 Gene3D Phosphorylase Kinase; domain 1 100 177 - -
Cma16g00213 384 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 32 383 - -
Cma16g00213 384 ProSiteProfiles Protein kinase domain profile. 100 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00213 384 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 32 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00355 Cma-Chr4:1742282 Cma16g00213 Cma-Chr16:967058 1.29E-143 dispersed
Cma15g01355 Cma-Chr15:8513992 Cma16g00213 Cma-Chr16:967058 2.79E-103 dispersed
Cma16g00213 Cma-Chr16:967058 Cma17g01238 Cma-Chr17:8497906 8.56E-67 dispersed
Cma16g00213 Cma-Chr16:967058 Cma02g00977 Cma-Chr2:5836545 8.50E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69183 PF07714 PK_Tyr_Ser-Thr 2.70E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00213 - - cmax:111483478 746.117