Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00219 ATGGAGCTCCAAAAACCCGATCCATTTGGCGACCCAAATTTGGTGCACAACAAAACCCCACTAACCTACGCCTATCTCTTCTCTTCTTTGACCGATCAATGGGGCGATTTGCCCCTCAAACTCGACGATTCTCACGACATGGTCATCTTCAATTCCCTTCACGACGCCGTCGTTTTCGTCCTTTCTCCTCTCCATTCCATCCATCCACCGGACGCCTCTTCCGCCCTCCACCTCGACCCCTTTCCGACCACCACTACGCCCGCCGCCCAGATGGGTGACAAGAGTAAGCGTTACCGTGGAGTGCGGCGGCGGCCCTGGGGGAAGTACGCTTCCGAGATTCGGGATCCGGCCAAGAGTGGTGCTCGTGTGTGGCTTGGCACGTACGAGACGGCTGAGGATGCTGCTTTAGCTTATGATCAAGCCGCCTTCAGAATGCGCGGCTCCAAGGCTCTTCTTAACTTCCCCAATCGCATTGGCTCTGACGACCCGCCACCGCTCCGAGTCTCGGCTCGACGTCGGGAGCATGATATCCTCGTGCCTTTGGCTGACGGGTCGGCTAAGAGAAGAAAAGGCGCAGCTAATATAAAAGCCGAACCAGAGTCGAGTAAGTCCCAGGTGGGGCCCTCCCAGATGGCAGCATTGCCAGTTGGCGAGAAGTTATTGGTTAACTAG 672 56.4 MELQKPDPFGDPNLVHNKTPLTYAYLFSSLTDQWGDLPLKLDDSHDMVIFNSLHDAVVFVLSPLHSIHPPDASSALHLDPFPTTTTPAAQMGDKSKRYRGVRRRPWGKYASEIRDPAKSGARVWLGTYETAEDAALAYDQAAFRMRGSKALLNFPNRIGSDDPPPLRVSARRREHDILVPLADGSAKRRKGAANIKAEPESSKSQVGPSQMAALPVGEKLLVN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 994595 995266 - CmaCh16G002190.1 Cma16g00219 310817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00219 223 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 SUPERFAMILY DNA-binding domain 97 156 IPR016177 GO:0003677
Cma16g00219 223 PANTHER BNAANNG21280D PROTEIN 23 173 - -
Cma16g00219 223 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 CDD AP2 96 156 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 MobiDBLite consensus disorder prediction 183 223 - -
Cma16g00219 223 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700|GO:0006355
Cma16g00219 223 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Cma16g00219 223 PANTHER DNA-BINDING DOMAIN 23 173 IPR044808 GO:0003700|GO:0009873
Cma16g00219 223 MobiDBLite consensus disorder prediction 75 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01361 Cma16g00219 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00207 Cma-Chr7:958448 Cma16g00219 Cma-Chr16:994595 1.66E-33 dispersed
Cma16g00219 Cma-Chr16:994595 Cma16g01116 Cma-Chr16:8582031 1.02E-49 dispersed
Cma16g00218 Cma-Chr16:991167 Cma16g00219 Cma-Chr16:994595 2.56E-27 tandem
Cma06g00936 Cma-Chr6:6326787 Cma16g00219 Cma-Chr16:994595 4.83E-31 transposed
Cma16g00219 Cma-Chr16:994595 Cma02g00983 Cma-Chr2:5856678 4.63E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36514 PF00847 AP2 6.30E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00219 K09286 - rcu:8289660 195.282