Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00221 ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA 657 54.95 MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGVSEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1001423 1002079 - CmaCh16G002210.1 Cma16g00221 310819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00221 218 Gene3D - 81 156 - -
Cma16g00221 218 PANTHER UNKEMPT FAMILY MEMBER 35 175 IPR045234 -
Cma16g00221 218 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 111 IPR000571 GO:0046872
Cma16g00221 218 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Cma16g00221 218 SUPERFAMILY CCCH zinc finger 85 116 IPR036855 GO:0046872
Cma16g00221 218 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 35 175 - -
Cma16g00221 218 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Cma16g00221 218 SMART c3hfinal6 121 144 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00221 Cma-Chr16:1001423 Cma04g01112 Cma-Chr4:5737546 3.27E-51 dispersed
Cma16g00221 Cma-Chr16:1001423 Cma04g00150 Cma-Chr4:731055 6.87E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36515 PF00642 zf-CCCH 5.00E-06 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00221 - - mcha:111011570 285.419