Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00221 | ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA | 657 | 54.95 | MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGVSEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1001423 | 1002079 | - | CmaCh16G002210.1 | Cma16g00221 | 310819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00221 | 218 | Gene3D | - | 81 | 156 | - | - | |
Cma16g00221 | 218 | PANTHER | UNKEMPT FAMILY MEMBER | 35 | 175 | IPR045234 | - | |
Cma16g00221 | 218 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 111 | IPR000571 | GO:0046872 | |
Cma16g00221 | 218 | ProSiteProfiles | Zinc finger C3H1-type profile. | 86 | 113 | IPR000571 | GO:0046872 | |
Cma16g00221 | 218 | SUPERFAMILY | CCCH zinc finger | 85 | 116 | IPR036855 | GO:0046872 | |
Cma16g00221 | 218 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 | 35 | 175 | - | - | |
Cma16g00221 | 218 | SMART | c3hfinal6 | 86 | 112 | IPR000571 | GO:0046872 | |
Cma16g00221 | 218 | SMART | c3hfinal6 | 121 | 144 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00221 | Cma-Chr16:1001423 | Cma04g01112 | Cma-Chr4:5737546 | 3.27E-51 | dispersed | |
Cma16g00221 | Cma-Chr16:1001423 | Cma04g00150 | Cma-Chr4:731055 | 6.87E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36515 | PF00642 | zf-CCCH | 5.00E-06 | CL0537 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00221 | - | - | mcha:111011570 | 285.419 |