Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00244 ATGGGTACAAGGACACAGCAACAATGCCGAGAAGACAACGAGGATGACCTCCCAAGTGGCCCTGGTGCCGCCACAATTTCGAGTCAGTCTGTTTCCATGAGTGGCAGTGTGGGGTCTCCTTATAGCCGCAGCGACCAAACCATGGCCACGCCTGCCAGCGACAAAGCTTTTCTTCGATTGAACAACCCCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCTATTGGTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGGAGAACGAATTATAACGAGGTTGCAGATGAACTTGTAGCCGAGTTTGCAGATCCTGGCAACGGTCTCGCATCGCCAGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGCGAATGATATTGAAGAACTAAAGGCCGAGCGTCTTGGACTTAGAAAAAGGATAGAAAAGAAAGCGGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTACGAGAATGCTCCGAGTGGTGGCGTGTCTTTACCTTTTATCCTCGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGACATGCAGCTGGTGCATTTCGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAACGCGACGACACGGCACAAAATTTTACTCCCGATAGGGGGGAGGGCTCTAGCATGTATCGATCACACCGGACCCCTCTTCCTTCAATGTCTAACACGCCGATTAGAACTCCAACCTCACCACCACTTCCCGGAATTATAAAAGCTCGCATCAAACACGAACATTGA 1035 48.41 MGTRTQQQCREDNEDDLPSGPGAATISSQSVSMSGSVGSPYSRSDQTMATPASDKAFLRLNNPDIHGDEAGSQGPIGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTNYNEVADELVAEFADPGNGLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSANDIEELKAERLGLRKRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSYENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQRDDTAQNFTPDRGEGSSMYRSHRTPLPSMSNTPIRTPTSPPLPGIIKARIKHEH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1132397 1138229 - CmaCh16G002440.1 Cma16g00244 310842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00244 344 SMART DP_2 182 342 IPR014889 -
Cma16g00244 344 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cma16g00244 344 MobiDBLite consensus disorder prediction 291 333 - -
Cma16g00244 344 PIRSF Txn_factor_DP 2 344 IPR015648 GO:0005667|GO:0051726
Cma16g00244 344 Pfam Transcription factor DP 183 294 IPR014889 -
Cma16g00244 344 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cma16g00244 344 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667|GO:0006355
Cma16g00244 344 PANTHER TRANSCRIPTION FACTOR DP 5 344 - -
Cma16g00244 344 CDD DP_DD 180 283 IPR014889 -
Cma16g00244 344 MobiDBLite consensus disorder prediction 1 95 - -
Cma16g00244 344 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667|GO:0006355
Cma16g00244 344 Gene3D - 88 180 IPR036388 -
Cma16g00244 344 Gene3D Transcription factor DP 181 304 IPR038168 -
Cma16g00244 344 PANTHER TRANSCRIPTION FACTOR DP 5 344 IPR015648 GO:0005667|GO:0051726
Cma16g00244 344 MobiDBLite consensus disorder prediction 22 51 - -
Cma16g00244 344 Coils Coil 191 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00244 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00244 Cma-Chr16:1132397 Cma04g00385 Cma-Chr4:1931497 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36518 PF08781 DP 1.30E-40 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00244 Cma_Chr16 FPKM 5.30483 6.573432 5.88374 6.612941 9.760088 9.534281 8.966059 12.272272 13.528614 11.802608