Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00244 | ATGGGTACAAGGACACAGCAACAATGCCGAGAAGACAACGAGGATGACCTCCCAAGTGGCCCTGGTGCCGCCACAATTTCGAGTCAGTCTGTTTCCATGAGTGGCAGTGTGGGGTCTCCTTATAGCCGCAGCGACCAAACCATGGCCACGCCTGCCAGCGACAAAGCTTTTCTTCGATTGAACAACCCCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCTATTGGTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGGAGAACGAATTATAACGAGGTTGCAGATGAACTTGTAGCCGAGTTTGCAGATCCTGGCAACGGTCTCGCATCGCCAGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGCGAATGATATTGAAGAACTAAAGGCCGAGCGTCTTGGACTTAGAAAAAGGATAGAAAAGAAAGCGGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTACGAGAATGCTCCGAGTGGTGGCGTGTCTTTACCTTTTATCCTCGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGACATGCAGCTGGTGCATTTCGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAACGCGACGACACGGCACAAAATTTTACTCCCGATAGGGGGGAGGGCTCTAGCATGTATCGATCACACCGGACCCCTCTTCCTTCAATGTCTAACACGCCGATTAGAACTCCAACCTCACCACCACTTCCCGGAATTATAAAAGCTCGCATCAAACACGAACATTGA | 1035 | 48.41 | MGTRTQQQCREDNEDDLPSGPGAATISSQSVSMSGSVGSPYSRSDQTMATPASDKAFLRLNNPDIHGDEAGSQGPIGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTNYNEVADELVAEFADPGNGLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSANDIEELKAERLGLRKRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSYENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQRDDTAQNFTPDRGEGSSMYRSHRTPLPSMSNTPIRTPTSPPLPGIIKARIKHEH | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1132397 | 1138229 | - | CmaCh16G002440.1 | Cma16g00244 | 310842 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00244 | 344 | SMART | DP_2 | 182 | 342 | IPR014889 | - | |
Cma16g00244 | 344 | SUPERFAMILY | Winged helix DNA-binding domain | 95 | 176 | IPR036390 | - | |
Cma16g00244 | 344 | MobiDBLite | consensus disorder prediction | 291 | 333 | - | - | |
Cma16g00244 | 344 | PIRSF | Txn_factor_DP | 2 | 344 | IPR015648 | GO:0005667|GO:0051726 | |
Cma16g00244 | 344 | Pfam | Transcription factor DP | 183 | 294 | IPR014889 | - | |
Cma16g00244 | 344 | SUPERFAMILY | E2F-DP heterodimerization region | 182 | 294 | IPR037241 | - | |
Cma16g00244 | 344 | SMART | E2F_TDP_2 | 92 | 175 | IPR003316 | GO:0005667|GO:0006355 | |
Cma16g00244 | 344 | PANTHER | TRANSCRIPTION FACTOR DP | 5 | 344 | - | - | |
Cma16g00244 | 344 | CDD | DP_DD | 180 | 283 | IPR014889 | - | |
Cma16g00244 | 344 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
Cma16g00244 | 344 | Pfam | E2F/DP family winged-helix DNA-binding domain | 95 | 175 | IPR003316 | GO:0005667|GO:0006355 | |
Cma16g00244 | 344 | Gene3D | - | 88 | 180 | IPR036388 | - | |
Cma16g00244 | 344 | Gene3D | Transcription factor DP | 181 | 304 | IPR038168 | - | |
Cma16g00244 | 344 | PANTHER | TRANSCRIPTION FACTOR DP | 5 | 344 | IPR015648 | GO:0005667|GO:0051726 | |
Cma16g00244 | 344 | MobiDBLite | consensus disorder prediction | 22 | 51 | - | - | |
Cma16g00244 | 344 | Coils | Coil | 191 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00244 | Cma-Chr16:1132397 | Cma04g00385 | Cma-Chr4:1931497 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36518 | PF08781 | DP | 1.30E-40 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00244 | K04683 | - | csv:101216863 | 608.601 |