Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00244 ATGGGTACAAGGACACAGCAACAATGCCGAGAAGACAACGAGGATGACCTCCCAAGTGGCCCTGGTGCCGCCACAATTTCGAGTCAGTCTGTTTCCATGAGTGGCAGTGTGGGGTCTCCTTATAGCCGCAGCGACCAAACCATGGCCACGCCTGCCAGCGACAAAGCTTTTCTTCGATTGAACAACCCCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCTATTGGTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGGAGAACGAATTATAACGAGGTTGCAGATGAACTTGTAGCCGAGTTTGCAGATCCTGGCAACGGTCTCGCATCGCCAGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTGCCACGTACCAGCGCGAATGATATTGAAGAACTAAAGGCCGAGCGTCTTGGACTTAGAAAAAGGATAGAAAAGAAAGCGGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTACGAGAATGCTCCGAGTGGTGGCGTGTCTTTACCTTTTATCCTCGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGACATGCAGCTGGTGCATTTCGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAACTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAACGCGACGACACGGCACAAAATTTTACTCCCGATAGGGGGGAGGGCTCTAGCATGTATCGATCACACCGGACCCCTCTTCCTTCAATGTCTAACACGCCGATTAGAACTCCAACCTCACCACCACTTCCCGGAATTATAAAAGCTCGCATCAAACACGAACATTGA 1035 48.41 MGTRTQQQCREDNEDDLPSGPGAATISSQSVSMSGSVGSPYSRSDQTMATPASDKAFLRLNNPDIHGDEAGSQGPIGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTNYNEVADELVAEFADPGNGLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSANDIEELKAERLGLRKRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSYENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQRDDTAQNFTPDRGEGSSMYRSHRTPLPSMSNTPIRTPTSPPLPGIIKARIKHEH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1132397 1138229 - CmaCh16G002440.1 Cma16g00244 310842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00244 344 SMART DP_2 182 342 IPR014889 -
Cma16g00244 344 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cma16g00244 344 MobiDBLite consensus disorder prediction 291 333 - -
Cma16g00244 344 PIRSF Txn_factor_DP 2 344 IPR015648 GO:0005667|GO:0051726
Cma16g00244 344 Pfam Transcription factor DP 183 294 IPR014889 -
Cma16g00244 344 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cma16g00244 344 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667|GO:0006355
Cma16g00244 344 PANTHER TRANSCRIPTION FACTOR DP 5 344 - -
Cma16g00244 344 CDD DP_DD 180 283 IPR014889 -
Cma16g00244 344 MobiDBLite consensus disorder prediction 1 95 - -
Cma16g00244 344 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667|GO:0006355
Cma16g00244 344 Gene3D - 88 180 IPR036388 -
Cma16g00244 344 Gene3D Transcription factor DP 181 304 IPR038168 -
Cma16g00244 344 PANTHER TRANSCRIPTION FACTOR DP 5 344 IPR015648 GO:0005667|GO:0051726
Cma16g00244 344 MobiDBLite consensus disorder prediction 22 51 - -
Cma16g00244 344 Coils Coil 191 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00244 Cma-Chr16:1132397 Cma04g00385 Cma-Chr4:1931497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36518 PF08781 DP 1.30E-40 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00244 K04683 - csv:101216863 608.601