Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00245 ATGGCAGTGCAGTCGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGCCAGTTCTACCCAGCACTGGTCTATTTATCGACTTCCAAGATAAATTTAGTGCTTCTTCTCAATATGGGTCTAATCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAGGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATAACTATTTTCCGCCAAGATTTTTCTGTTTCATTCCTTGGTATGGTTACGGCTCTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCCTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAGGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCAACAACGGCTGTCTCAACGTTTGTAAAATATATTTTCTACGTCAGTGATGTACTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAACTTATCCGAGACTTACTTCACTTGTCAATGTACCTGTGTTTCTTTCTTGTGATTTTCATGACCTATGGTGTTCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATCCGTTATAGAAAGATTACTTCAAACATGAATGATCGCTTTCCTGATGCAACGTCTGAAGAACTCAATTCAAGTGACGCAACATGCATTATCTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGATCCTGGTTGGAGCGACAACATACTTGCCCAACCTGCAGAGCTCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGCCGGTCATCATGGACCACAATCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCCGCGCAAGGTACGAGTGATACAGGTGTTGCTAATGATAATTTGAGCCATCATCAGGCTAGAGTCCGAGCTGCTGCGGCTGCAGCTTCTGTATATGAGAAATCATATGTTTATCCTTGTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTTTGCCTGACTCCAATAACATAGAACCAAATGGACATCCACAACAATTTTCTTTTACTGGCGGCCCTTCCAACCTGTCCTTTACTCAATTTCCCCAGAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGTACTGGAAACAATACGGACGGATTGGGCAGTAGTCAAAATGTATCAGGCTTACATCTTGAAGCTCAAGAAAGATTTCTCCAGCAACAGATTGAGATCCTACAGAATCAGCTGCAACATCTCCGTAAACCAGAAGTTGAGGAAAGCTCAGGAGCAGGTGAGGCCGATAAGAAAGGGAAAAGTGTAGCATTCTCGTCACTGTCGTCGCCGTCACCATCGCCGTCGTCATCTGATTCTCGATGA 1650 42.97 MAVQSRMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLIIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVSFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATSEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAAGHHGPQSDANQQGTGTTSSSAQGTSDTGVANDNLSHHQARVRAAAAAASVYEKSYVYPCASTLVWSPGYAVVPQVERPLPDSNNIEPNGHPQQFSFTGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGLGSSQNVSGLHLEAQERFLQQQIEILQNQLQHLRKPEVEESSGAGEADKKGKSVAFSSLSSPSPSPSSSDSR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1140854 1145843 + CmaCh16G002450.1 Cma16g00245 310843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00245 549 PANTHER RING ZINC FINGER PROTEIN 7 454 - -
Cma16g00245 549 MobiDBLite consensus disorder prediction 343 380 - -
Cma16g00245 549 MobiDBLite consensus disorder prediction 531 549 - -
Cma16g00245 549 MobiDBLite consensus disorder prediction 349 380 - -
Cma16g00245 549 SUPERFAMILY RING/U-box 278 342 - -
Cma16g00245 549 CDD RING-H2_synoviolin 295 336 - -
Cma16g00245 549 SMART ring_2 298 335 IPR001841 -
Cma16g00245 549 Pfam Ring finger domain 297 336 IPR001841 -
Cma16g00245 549 MobiDBLite consensus disorder prediction 511 549 - -
Cma16g00245 549 ProSiteProfiles Zinc finger RING-type profile. 298 336 IPR001841 -
Cma16g00245 549 PANTHER - 7 454 - -
Cma16g00245 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 342 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01052 Cma-Chr2:6276781 Cma16g00245 Cma-Chr16:1140854 6.12E-21 dispersed
Cma16g00245 Cma-Chr16:1140854 Cma13g00964 Cma-Chr13:7534565 2.81E-09 dispersed
Cma16g00245 Cma-Chr16:1140854 Cma04g00386 Cma-Chr4:1947244 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00245 K10601 - csv:101215351 945.266