Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00247 | ATGTTGGGGATGTTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGACGCTCGGTTTTGTTTCGCTGCTCTCTGCTAATACCGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTGCAGAGTTGGGATCCTACGCTTGTTAATCCCTGCACATGGTTCCACGTTACCTGTGACAGTGATAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTGATCTTCCGAGTTTGCAATATTTGGAACTATATAGTAACAATATTACTGGAGAAATTCCGCGAGAAATTGGGCTTTTGACAAACTTGGTGAGCTTGGACCTTTACTTGAACAATTTAACTGGTCAAATACCTGTCACACTTGGGGAGCTTGGAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTCTCATACAACCAGCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATCTTCTTAATGAATCGACTGCACGTACACCACCACCTCCTTTACCTTCTTCACCAAACCCCACATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCACCAGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTTGGTAGGGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGCTTTTGTATGACACCCACTGAACGGTTGCTGGTCTACCCATATATGGTTAATGGAAGTGTAGCATCGTGTTTACGAGAACGTGGAGATTCACAGCCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGATCGGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGCGATGTGAAAGCTGCGAATATTTTGCTTGACGAGGAGTATGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGAGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACAGGAAAATCTTCTGAAAAGACCGATGTTTTTGGGTATGGGGTCATGCTTCTTGAACTCATAACTGGACAGAGAGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCTCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCATTGTTGTGCACACAAGGAACTCCTACAGAGCGGCCTAAGATGTCAGAGGTCGTACGGATGCTCGAGGGCGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGTGGTTTCATCAAGACACAAGCCGCAATCCCCACCCGAGTGCAACGTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA | 1839 | 45.41 | MLGMLGSSSSLWIILTLGFVSLLSANTEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSDNSVTRVDLGNANLSGTLVPQLGDLPSLQYLELYSNNITGEIPREIGLLTNLVSLDLYLNNLTGQIPVTLGELGKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNQLTGDIPVNGSFSLFTPISFAHNLLNESTARTPPPPLPSSPNPTSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMVNGSVASCLRERGDSQPPLNWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDLDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEEWFHQDTSRNPHPSATWILDSTAEIPPDELSGPR | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1147203 | 1154138 | + | CmaCh16G002470.1 | Cma16g00247 | 310845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00247 | 612 | MobiDBLite | consensus disorder prediction | 582 | 612 | - | - | |
Cma16g00247 | 612 | Pfam | Leucine rich repeat N-terminal domain | 25 | 65 | IPR013210 | - | |
Cma16g00247 | 612 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 412 | 424 | IPR008271 | GO:0004672|GO:0006468 | |
Cma16g00247 | 612 | SMART | serkin_6 | 289 | 563 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma16g00247 | 612 | Gene3D | Phosphorylase Kinase; domain 1 | 258 | 365 | - | - | |
Cma16g00247 | 612 | ProSiteProfiles | Leucine-rich repeat profile. | 165 | 187 | IPR001611 | GO:0005515 | |
Cma16g00247 | 612 | Gene3D | Ribonuclease Inhibitor | 24 | 205 | IPR032675 | - | |
Cma16g00247 | 612 | ProSitePatterns | Protein kinases ATP-binding region signature. | 295 | 317 | IPR017441 | GO:0005524 | |
Cma16g00247 | 612 | MobiDBLite | consensus disorder prediction | 201 | 222 | - | - | |
Cma16g00247 | 612 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 612 | - | - | |
Cma16g00247 | 612 | PANTHER | BNAA08G11770D PROTEIN | 7 | 612 | IPR031048 | GO:0004675|GO:0005102|GO:0006468 | |
Cma16g00247 | 612 | ProSiteProfiles | Protein kinase domain profile. | 289 | 581 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma16g00247 | 612 | SUPERFAMILY | L domain-like | 27 | 202 | - | - | |
Cma16g00247 | 612 | SUPERFAMILY | Protein kinase-like (PK-like) | 268 | 564 | IPR011009 | - | |
Cma16g00247 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 366 | 583 | - | - | |
Cma16g00247 | 612 | Pfam | Protein kinase domain | 290 | 561 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00792 | Cma-Chr4:4036169 | Cma16g00247 | Cma-Chr16:1147203 | 0 | dispersed | |
Cma09g01190 | Cma-Chr9:7646946 | Cma16g00247 | Cma-Chr16:1147203 | 0 | dispersed | |
Cma16g00247 | Cma-Chr16:1147203 | Cma05g00027 | Cma-Chr5:126553 | 0 | dispersed | |
Cma19g00561 | Cma-Chr19:6373910 | Cma16g00247 | Cma-Chr16:1147203 | 3.75E-71 | dispersed | |
Cma16g00247 | Cma-Chr16:1147203 | Cma04g00386 | Cma-Chr4:1947244 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69184 | PF00069 | Pkinase | 1.60E-44 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00247 | K13416 | - | csv:101216389 | 1106.28 |