Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00247 ATGTTGGGGATGTTGGGTTCTTCGTCTTCTCTGTGGATCATTTTGACGCTCGGTTTTGTTTCGCTGCTCTCTGCTAATACCGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTGCAGAGTTGGGATCCTACGCTTGTTAATCCCTGCACATGGTTCCACGTTACCTGTGACAGTGATAATAGTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTGATCTTCCGAGTTTGCAATATTTGGAACTATATAGTAACAATATTACTGGAGAAATTCCGCGAGAAATTGGGCTTTTGACAAACTTGGTGAGCTTGGACCTTTACTTGAACAATTTAACTGGTCAAATACCTGTCACACTTGGGGAGCTTGGAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTCTCATACAACCAGCTAACTGGAGATATTCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATCTTCTTAATGAATCGACTGCACGTACACCACCACCTCCTTTACCTTCTTCACCAAACCCCACATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCACCAGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTTGGTAGGGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGCTTTTGTATGACACCCACTGAACGGTTGCTGGTCTACCCATATATGGTTAATGGAAGTGTAGCATCGTGTTTACGAGAACGTGGAGATTCACAGCCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGATCGGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGCGATGTGAAAGCTGCGAATATTTTGCTTGACGAGGAGTATGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGAGGAACAATTGGGCATATAGCGCCCGAGTACCTTTCGACAGGAAAATCTTCTGAAAAGACCGATGTTTTTGGGTATGGGGTCATGCTTCTTGAACTCATAACTGGACAGAGAGCCTTCGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCTCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCATTGTTGTGCACACAAGGAACTCCTACAGAGCGGCCTAAGATGTCAGAGGTCGTACGGATGCTCGAGGGCGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGTGGTTTCATCAAGACACAAGCCGCAATCCCCACCCGAGTGCAACGTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1839 45.41 MLGMLGSSSSLWIILTLGFVSLLSANTEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSDNSVTRVDLGNANLSGTLVPQLGDLPSLQYLELYSNNITGEIPREIGLLTNLVSLDLYLNNLTGQIPVTLGELGKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNQLTGDIPVNGSFSLFTPISFAHNLLNESTARTPPPPLPSSPNPTSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMVNGSVASCLRERGDSQPPLNWLNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDLDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEEWFHQDTSRNPHPSATWILDSTAEIPPDELSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1147203 1154138 + CmaCh16G002470.1 Cma16g00247 310845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00247 612 MobiDBLite consensus disorder prediction 582 612 - -
Cma16g00247 612 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cma16g00247 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cma16g00247 612 SMART serkin_6 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00247 612 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Cma16g00247 612 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Cma16g00247 612 Gene3D Ribonuclease Inhibitor 24 205 IPR032675 -
Cma16g00247 612 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cma16g00247 612 MobiDBLite consensus disorder prediction 201 222 - -
Cma16g00247 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 612 - -
Cma16g00247 612 PANTHER BNAA08G11770D PROTEIN 7 612 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cma16g00247 612 ProSiteProfiles Protein kinase domain profile. 289 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00247 612 SUPERFAMILY L domain-like 27 202 - -
Cma16g00247 612 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Cma16g00247 612 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Cma16g00247 612 Pfam Protein kinase domain 290 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00792 Cma-Chr4:4036169 Cma16g00247 Cma-Chr16:1147203 0 dispersed
Cma09g01190 Cma-Chr9:7646946 Cma16g00247 Cma-Chr16:1147203 0 dispersed
Cma16g00247 Cma-Chr16:1147203 Cma05g00027 Cma-Chr5:126553 0 dispersed
Cma19g00561 Cma-Chr19:6373910 Cma16g00247 Cma-Chr16:1147203 3.75E-71 dispersed
Cma16g00247 Cma-Chr16:1147203 Cma04g00386 Cma-Chr4:1947244 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69184 PF00069 Pkinase 1.60E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00247 K13416 - csv:101216389 1106.28