Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00254 ATGGACTCCGTCTTTGCTGCTGCGACGAGCAACATAGCTGTATGCTGCGTTTCAAAGGCCTTGAATCGGAGGCTCTCCGAAATTGTTCGTAGAAGATGCGTTCGCGGTGGTGACCGAGCTCGCAATTTCAACTGCATTTCCAGTTACCTTGCTCTATACGGAACTGGATTTATTGGTTCTTCTTCACCGTCGCTTAGGGCTCTGCAAGTTGTTTTGCCTTCGCTGCAGCATCGTTTGCGTTGCGTTTCGAGTTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTTTTGGAGGGAATAATGGCGGCGGAGGTCGTGGTGGAGATGGTGGCCTGGGCGGTGGAGATGCGAATAAGTTTGTTTCTGGAAGTGCCGAGGAGCCACAAGTGTCATCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTCATATGGCCAGTTCCGGAGGTTAAAGATTCGCCGAATTGGCTAAAGCAGCTGGGAGAGACGCTTGCTAATCATCTAACTCGATGTGGTTTTGCATCTAGTCTTCGAGTTTGGGACTTACTAACCTTGAATCTTGTCAAAGTTGGACATCTTCTTCAACTTCAACAACAGTCTGGGCCTAATAATACTACTGTTCTTATGTGTCCAGAGTCAGGAAGAGACAATATCTTCCTGGTTTTTGAAAGGAAGATGGAAGAAAAGCGCAATCGATTAAAAGAGAGTGGCCGCAATCTTGTTTTTTCCTGGGCTCTGTGTGCTGTGTGCCTTCTTGGCCACATTTCTCATTTCTTTGGCGCTAAGGCTTCATGGATCCATACATTTCATACTACTCAATTTCATCTATCATTGTGCTTATTTACATTACTTGGCCCTGGTCGTCAACTTATTATTGAGGGTATGAAAAGTCTTGTCAAAGGAGCTCCAAACATGAACACTTTAGTCGGACTTGGAGCTCTATCATCCTTTACTGTTAGCTCATTGGCGGCCTTAATACCAAAACTTGGTTGGAAGGCTTTCTTTGAGGAACCAGTTATGTTAATAGCATTTGTATTGTTAGGAAGGAACCTTGAACAGAGAGCTAAAATTAGAGCTGCGAGTGATATGACAGGTCTTCTTAGTATTTTACCTTCAAAAGCTCGTCTTGTTGTTGATGGTGATACTGAATCGGGTTCAATGGTTGAAATTCCTTGTTCTAGTCTTTCAATTGGAGATGAAGTTATTGTCCTTCCTGGGGACCGTGTTCCTGCTGATGGAATTGTGAAATCTGGTAGAAGCATTGTGGATGAGTCTAGTTTCACTGGGGAGCCATTACCTGTTACCAAGCTGCCTGGGAGCCAAGTTGCAGCAGGAACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCAGCGGCCAGGAGGTGAGACTGCTATGGGAGATATCGTTCGTTTGGTAGAAGAGGCTCAAAGCCGGGAAGCTCCTGTTCAACGGTTGGCTGACAAGGTGTCTGGGCACTTCACTTATGGAGTAATGGCACTCTCTGCTGCAACTTTTATATTTTGGAGTCAATTTGGATCACGCATTCTGCCTGCAGCTCTTTACCATGGAAATTCAGTTTCATTGGCACTGCAGCTTTCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTTGGCTTAGCTACTCCAACTGCAATGCTGGTTGGAACTTCATTAGGTGCAACTAAAGGATTACTTCTGCGGGGTGGAAATATCTTAGAGCAGTTTTCAATGGTGGATACTGTTGTCTTTGACAAAACAGGGACCTTGACAGTTGGGAAACCTGTTGTGACAAAGGTGTTGGCGACTTCTGGATATGAGAGAAATGTAGATTCACAGATAAACTCACACGGCAATCATTCAGAAAATGAGATTCTCAAGTTTGCTGCTGCAGTGGAATCTAACACAGTTCACCCAGTTGGCAAAGCAATTGTAGAAGCTGCTCGAGCTGTTAATGTTCAGAATTTGAAGGTGGTTGATGGAACATTCATTGAAGAACCTGGTTCTGGTGCTGTTGCAACAGTAGAAAACAGGATAATATCTGTCGGAACTTTGGACTGGGTTCAGAGGCATGGAGTTGTTGCTGATCATTTTCAAGAAACGGATGATCTCAAAGCTCAATCGGTCGTTTATGTAGGAATAGACAATATTCTTGCTGGTCATATTTATTATGAGGATGGCATACGGGAAGAGGCTAGTCATGTCATCGACACTTTATCTAGGCAAGGAATTAACACATACATGTTGTCTGGCGACAAAAGGAGTACTGCCGAGTACGTCGCATCTCTTGTTGGAATTCCAAAAGAGAAGGTACGATCTGGAGTTAAACCCCATGAAAAGAAGAAGTTTATTAGTGAACTTCAGGAGAGCCGCAACATTGTAGCCATGGTTGGTGATGGAATCAACGATGCTGCTGCCTTGGCTACTGCAGATATTGGAATTGCGATGGGTGGGGGTGTCGGAGCCGCCAGCGAGGTGTCTCCTATAGTGTTAATGGGCAACAGACTCTCTCAGTTGCTTGATGCTTTGGAGCTTAGCAGGTTAACCATGAAGACCGTGAAGCAAAACCTTTGGTGGGCTTTTGGATATAACATCGTGGGAATTCCAATTGCGGCAGGCGTCTTGCTTCCTATTACTGGGACTATACTCACACCTTCCATTGCGGGTGCCCTTATGGGTCTGAGTTCCCTGCTTTTCACTCATCTTCCAAATCTTTCAAGATTCAGGACTTTCCCCTGCTTAATGGCTGAGGGTGAATTAGAGAGGGGAGAGGCCAATTGTAGGCTTGCTTCCATGGATTCCTCCGAGTCCCGATGGGTATTTCAGGATGAGGACCAATCGGACATCGACGAGGAGGAGGAGGACGAGGATGACGAGGAGAATGCAGCGCAGCATCGTATGGATTTGGAGTCTGAGGAAGAAGATAATGTTGAGCAGAAATTGATTCGGACTGGCCCACGTATTGATTCCTTCGATGTCGAAGCTCTTGAGGTCCCTGGTGCACATAGAAATGAATACGAGGACTTCAGCGTGGGAAAGAAAATTACTCTTGCTTTTCAAACCCTTGGAGTTGTATTTGGTGATGTTGGGACAAGCCCTCTGTATACCTTCAGTGTCATGTTCTACAAGGCTCCTATTATGGAAGATGAAGATGTTATTGGGGCATTATCTCTAGTTATCTACACCTTAATCTTGATTTCACTAGTCAAGTATGTTCTTGTTGTTCTGCTGGCAAATGATGATGGTGAAGGTGGTACTTTTGCTTTGTACTCTTTGATTTGTAGACATGCCAAGGTCAGTCTACTCCCAAATCAACTGCCTTCAGATACCCGAATATCACGTTTTAGGTTAAAGGTGCCATCGCCTGAATTGGAAAGATCACTAAGAATAAAGGAAAAACTTGAGACTTCCCTGACTTTAAAGAAGCTTCTCTTGATGCTTGTTCTTGCTGGAACTTCTATGGTAATAGCCGATGGAGTTATTACACCAGCGATGTCAGTAATGTCGGCTGTTGGTGGACTAAAGATTGGAGTGGATGCGATCAATCAAGATGAGGTTGTGATGATCTCAGTTGCCTGTCTTATAGTTTTGTTCAGTGTTCAGAAGTATGGCACTAGCAAAGTGGGGCTGGCTCTTGGTCCTGCATTATTCGTATGGTTTTGTACACTTGCAGTCATGGGGATTTATAACCTTGTCATATATGATAGCAGTGTCTTGAAGGCATTCAATCCTGTTCATATTTATTATTTCTTCAAGAGGAACTCTACCAATGCATGGTATTGCCTTGGAGGTTGTTTATTATGTGCTACAGGTTCGGAGGCAATGTTTGCGGATCTTTGCTATTTCTCTGTGCAGTCAATACAGCTTACGTTTGTGTTTCTTGTCTTGCCTTGTCTTTTATTGGGTTATTTGGGTCAAGCTGCCTACCTTATATCAAACCACAATGGAGCTGAGCACGTATTTTTTAATTCTGTTCCCAAAAGTGCCTTTTGGCCAGTTTTTCTCATTGCTAATGTTGCTGCATTAATTGCGAGTCGAGCAATGACTACAGCTACCTTTTCGTGTATAAAACAATCAACGGCACTTGGTTGTTTTCCTCGTCTTAAGATCATTCATACATCTAGGAAATTCATGGGGCAAATCTATATCCCGGTGTTGAATTGGTTTTTGTTGGCCGTTTGCCTGGTGGTTGTCTGCTCCATTTCTAGCATGTATGAGATTGGAAACGCATATGGTATTGCCGAGCTCGGAGTGATGATGATGACTACTGTCTTGGCAACCATTGTTATGCTTCTTATATGGCAGATAAACATTATCATTGTAATGGGTTTTGCGATGATCTTTCTTGGGATGGAACTGATATTTTTCTCGTCTGTGTTATGGGGTGTGGGTGATGGAAGTTGGATCATATTGGTCTTCGCAGTGATTATGTTCTTCATTATGTATATTTGGAACTACGGAAGCAAGCTCAAATATGAAACTGAAGTCAAGCAAAAGCTGTCAATGGATTTAATGCGGGAGCTTGGGTGCAACCTTGGGACACTCAGAGCTCCTGGCATCGGTTTGCTATATAATGAACTAGTGAAAGGAATACCTGCAGTATTTGGCCAGTTTCTGACTACTCTTCCTGCAGTTCATTCAATGATCATATTTGTCTGCATCAAGTACATACCAGTTCCTGTCGTGCCTCAGAGTGAGAGATTTCTTTTCCGCCGAGTCTGCCCAAAGAGCTATCACATCTTTCGTTGCATTGCCAGGTACGAAAACTCAATTTCCATAAGAAATGTGGCTGCAACCCATTCATTTTGGTTGATCTTCTCATCAAAAAGATAA 4839 43.85 MDSVFAAATSNIAVCCVSKALNRRLSEIVRRRCVRGGDRARNFNCISSYLALYGTGFIGSSSPSLRALQVVLPSLQHRLRCVSSSSVSFASGGGNGGFGGNNGGGGRGGDGGLGGGDANKFVSGSAEEPQVSSASVNLTTETAVIWPVPEVKDSPNWLKQLGETLANHLTRCGFASSLRVWDLLTLNLVKVGHLLQLQQQSGPNNTTVLMCPESGRDNIFLVFERKMEEKRNRLKESGRNLVFSWALCAVCLLGHISHFFGAKASWIHTFHTTQFHLSLCLFTLLGPGRQLIIEGMKSLVKGAPNMNTLVGLGALSSFTVSSLAALIPKLGWKAFFEEPVMLIAFVLLGRNLEQRAKIRAASDMTGLLSILPSKARLVVDGDTESGSMVEIPCSSLSIGDEVIVLPGDRVPADGIVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVQRPGGETAMGDIVRLVEEAQSREAPVQRLADKVSGHFTYGVMALSAATFIFWSQFGSRILPAALYHGNSVSLALQLSCSVLVIACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEQFSMVDTVVFDKTGTLTVGKPVVTKVLATSGYERNVDSQINSHGNHSENEILKFAAAVESNTVHPVGKAIVEAARAVNVQNLKVVDGTFIEEPGSGAVATVENRIISVGTLDWVQRHGVVADHFQETDDLKAQSVVYVGIDNILAGHIYYEDGIREEASHVIDTLSRQGINTYMLSGDKRSTAEYVASLVGIPKEKVRSGVKPHEKKKFISELQESRNIVAMVGDGINDAAALATADIGIAMGGGVGAASEVSPIVLMGNRLSQLLDALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPITGTILTPSIAGALMGLSSLLFTHLPNLSRFRTFPCLMAEGELERGEANCRLASMDSSESRWVFQDEDQSDIDEEEEDEDDEENAAQHRMDLESEEEDNVEQKLIRTGPRIDSFDVEALEVPGAHRNEYEDFSVGKKITLAFQTLGVVFGDVGTSPLYTFSVMFYKAPIMEDEDVIGALSLVIYTLILISLVKYVLVVLLANDDGEGGTFALYSLICRHAKVSLLPNQLPSDTRISRFRLKVPSPELERSLRIKEKLETSLTLKKLLLMLVLAGTSMVIADGVITPAMSVMSAVGGLKIGVDAINQDEVVMISVACLIVLFSVQKYGTSKVGLALGPALFVWFCTLAVMGIYNLVIYDSSVLKAFNPVHIYYFFKRNSTNAWYCLGGCLLCATGSEAMFADLCYFSVQSIQLTFVFLVLPCLLLGYLGQAAYLISNHNGAEHVFFNSVPKSAFWPVFLIANVAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAVCLVVVCSISSMYEIGNAYGIAELGVMMMTTVLATIVMLLIWQINIIIVMGFAMIFLGMELIFFSSVLWGVGDGSWIILVFAVIMFFIMYIWNYGSKLKYETEVKQKLSMDLMRELGCNLGTLRAPGIGLLYNELVKGIPAVFGQFLTTLPAVHSMIIFVCIKYIPVPVVPQSERFLFRRVCPKSYHIFRCIARYENSISIRNVAATHSFWLIFSSKR 1612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1185501 1207037 - CmaCh16G002540.1 Cma16g00254 310852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00254 1612 ProSitePatterns E1-E2 ATPases phosphorylation site. 587 593 IPR018303 -
Cma16g00254 1612 TIGRFAM kup: potassium uptake protein 1019 1590 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma16g00254 1612 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 939 1590 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma16g00254 1612 CDD P-type_ATPase_HM 241 900 - -
Cma16g00254 1612 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Cma16g00254 1612 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cma16g00254 1612 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Cma16g00254 1612 PRINTS P-type cation-transporting ATPase superfamily signature 585 599 - -
Cma16g00254 1612 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Cma16g00254 1612 Pfam E1-E2 ATPase 370 564 - -
Cma16g00254 1612 SUPERFAMILY Calcium ATPase, transduction domain A 385 474 IPR008250 -
Cma16g00254 1612 Pfam K+ potassium transporter 1020 1589 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma16g00254 1612 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 288 900 - -
Cma16g00254 1612 Gene3D - 357 478 - -
Cma16g00254 1612 MobiDBLite consensus disorder prediction 947 963 - -
Cma16g00254 1612 SUPERFAMILY HAD-like 583 884 IPR036412 -
Cma16g00254 1612 ProSitePatterns Hypothetical cof family signature 2. 799 821 - -
Cma16g00254 1612 PANTHER POTASSIUM TRANSPORTER 7 939 1590 - -
Cma16g00254 1612 MobiDBLite consensus disorder prediction 939 979 - -
Cma16g00254 1612 SFLD Haloacid Dehalogenase 568 849 - -
Cma16g00254 1612 Pfam haloacid dehalogenase-like hydrolase 581 813 - -
Cma16g00254 1612 Gene3D - 576 849 IPR023214 -
Cma16g00254 1612 SUPERFAMILY Calcium ATPase, transmembrane domain M 340 872 IPR023298 -
Cma16g00254 1612 MobiDBLite consensus disorder prediction 100 128 - -
Cma16g00254 1612 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 635 889 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma16g00254 1612 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 344 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma16g00254 1612 MobiDBLite consensus disorder prediction 964 979 - -
Cma16g00254 1612 Gene3D - 596 730 IPR023299 GO:0000166
Cma16g00254 1612 SFLD p-type atpase 568 849 IPR044492 -
Cma16g00254 1612 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 306 900 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01913 Cma-Chr4:10149523 Cma16g00254 Cma-Chr16:1185501 0 dispersed
Cma07g01142 Cma-Chr7:6242112 Cma16g00254 Cma-Chr16:1185501 1.33E-110 dispersed
Cma10g00384 Cma-Chr10:1763343 Cma16g00254 Cma-Chr16:1185501 2.67E-62 dispersed
Cma16g00254 Cma-Chr16:1185501 Cma13g00853 Cma-Chr13:7035994 0 dispersed
Cma19g00255 Cma-Chr19:1826974 Cma16g00254 Cma-Chr16:1185501 1.21E-15 dispersed
Cma09g00366 Cma-Chr9:1514178 Cma16g00254 Cma-Chr16:1185501 6.91E-180 transposed
Cma11g01649 Cma-Chr11:10840973 Cma16g00254 Cma-Chr16:1185501 9.35E-12 wgd
Cma16g00254 Cma-Chr16:1185501 Cma04g00394 Cma-Chr4:1995766 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00254 K17686 - csv:101214702 1435.62