Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00257 ATGTTTGTAGGAGGTCGTTCGCAGGGTAGCTCTGGAAAGGGCAGGGGAAACCAATGCCCTGTCAGGTATGGCTTTAGCTTAGTAAAAGGCAAAGCAAACCATCCCATGGAAGACTATCATGTTGCTAAATTTATAACAGTACATGGCCATGAGCTAGGCCTTTTCGCCATATATGATGGTCATTTAGGAGACAGTGTACCAGCCTATCTTCAGAAGCATCTGTTTCCTAATATACTGAATGATGAGGAATTCTGGTCGAATCCCCGTAGCTCGATCTTTAAGGCTTACGAGACGACAGACCAAGCGATACTTTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACCGCCGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGAGCAGTCCTTTCGAGAAAAGGGCAGGAAGAGCAAATGTCGGTTGATCACGAGCCAAACACCGAGCGTGGAAGTATTGAGGACAGAGGTGGATTCGTCTCTAACATGCCAGGAGACGTTGCAAGAGTGAACGGGCAGCTAGCAGTTTCTAGAGCATTTGGCGACAAGAACCTCAAGACACACTTACGATCTGATCCCGACATAAAGAATGCTGATATCGACTCCGACACCGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTGATGACGAATCAAGAAGCGGTGGATATAGCAAGAAGAACGAAGGATCCGCAGCGAGCAGCAAAACAATTAGCAGCAGAAGCGTTGAAACGGGAAAGCAAAGACGACATCTCGATCATCGTAGTATGTTTCAAAGGCTAA 816 46.57 MFVGGRSQGSSGKGRGNQCPVRYGFSLVKGKANHPMEDYHVAKFITVHGHELGLFAIYDGHLGDSVPAYLQKHLFPNILNDEEFWSNPRSSIFKAYETTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSRKGQEEQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVCFKG 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1214713 1216492 + CmaCh16G002570.1 Cma16g00257 310855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00257 271 MobiDBLite consensus disorder prediction 141 161 - -
Cma16g00257 271 SUPERFAMILY PP2C-like 18 270 IPR036457 -
Cma16g00257 271 CDD PP2Cc 21 269 IPR001932 -
Cma16g00257 271 MobiDBLite consensus disorder prediction 141 165 - -
Cma16g00257 271 PANTHER PROTEIN PHOSPHATASE 2C 3 270 IPR015655 GO:0004722|GO:0006470
Cma16g00257 271 Pfam Protein phosphatase 2C 31 262 IPR001932 -
Cma16g00257 271 Gene3D - 6 271 IPR036457 -
Cma16g00257 271 SMART PP2C_SIG_2 33 269 IPR001932 -
Cma16g00257 271 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 3 270 - -
Cma16g00257 271 ProSiteProfiles PPM-type phosphatase domain profile. 22 269 IPR001932 -
Cma16g00257 271 SMART PP2C_4 18 267 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00557 Cma-Chr9:2534104 Cma16g00257 Cma-Chr16:1214713 6.16E-144 dispersed
Cma11g01913 Cma-Chr11:12647339 Cma16g00257 Cma-Chr16:1214713 7.26E-111 dispersed
Cma16g00066 Cma-Chr16:282142 Cma16g00257 Cma-Chr16:1214713 4.90E-60 dispersed
Cma16g00257 Cma-Chr16:1214713 Cma09g00389 Cma-Chr9:1640856 3.31E-63 dispersed
Cma09g00853 Cma-Chr9:4185781 Cma16g00257 Cma-Chr16:1214713 1.31E-115 transposed
Cma16g00257 Cma-Chr16:1214713 Cma04g00396 Cma-Chr4:2012083 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00257 K17506 - csv:101214223 503.442