Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00276 ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCAGAGGTGAATAACTTTTGCCAACCTCAATATCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAACCAAAGAACTTAGGCATATGAAGGGAGAAGAACTTCAAGAACTGGGAATAGAAGAATTAAAGAAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCTTAGAGACAAAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTGAGGAATCAAGTGAGAGCTTTGAATAGAGATCAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCTCAAGATTGTGATGATATTTCTCTCAAATTGGGGTTATCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTAGGCAATGCAAGCTCAGCCTTCTCTAA 672 41.07 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMHELLGRHNKLPEVNNFCQPQYQMEKSVCANLREEFAAKTKELRHMKGEELQELGIEELKKLEKLLEIGLNRVLETKEALLMKENQRLRNQVRALNRDQQEQQAVGVGGSSLGSKSITSNSSSSPNPSSQDCDDISLKLGLSLKAQSMRFSAAARQCKLSLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1285453 1289507 + CmaCh16G002760.1 Cma16g00276 310874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00276 223 Coils Coil 132 166 - -
Cma16g00276 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cma16g00276 223 Gene3D - 15 94 IPR036879 GO:0003677|GO:0046983
Cma16g00276 223 ProSiteProfiles K-box domain profile. 83 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma16g00276 223 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 200 - -
Cma16g00276 223 MobiDBLite consensus disorder prediction 156 193 - -
Cma16g00276 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma16g00276 223 Coils Coil 90 110 - -
Cma16g00276 223 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma16g00276 223 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Cma16g00276 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00276 Cma-Chr16:1285453 Cma09g00600 Cma-Chr9:2804731 4.76E-36 dispersed
Cma16g00276 Cma-Chr16:1285453 Cma16g00281 Cma-Chr16:1313922 1.99E-36 proximal
Cma06g00533 Cma-Chr6:2510739 Cma16g00276 Cma-Chr16:1285453 6.94E-07 transposed
Cma07g01190 Cma-Chr7:6534588 Cma16g00276 Cma-Chr16:1285453 9.67E-90 transposed
Cma16g00276 Cma-Chr16:1285453 Cma19g00475 Cma-Chr19:5685284 3.12E-58 wgd
Cma16g00276 Cma-Chr16:1285453 Cma03g00842 Cma-Chr3:6328471 6.08E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36519 PF01486 K-box 4.90E-11 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00276 - - csv:101223132 239.195