Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00281 ATGGGAAGAGGGAAGATAGTGATAAGAAGAATAGACAATTCAACGAGCAGACAAGTGACGTTTTCGAAGAGAAGAAGTGGGTTACTGAAGAAGGCTCGAGAGCTTTCGATTCTTTGTGATGCTGATGTTGGATTGATCATTTTTTCAAGCACTGGGAAGCTCTATGACTATTCCAGCTCCAGCATAAGGTCGATTACTGATCGCTACAACAAGATGAAAGAGGAGCAAAATCAGTTGATGAACCCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGGTTTGAAGCAACAACTGCATTACATGCAAGAATGTCACAGACAATTAATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAGATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGCGAGGAAATTACTCAACTAAGACAGAAGGTTCCCCCCACTGTAAACATCCATGTCTATGGACCCATGGAAGTGGATAAAACGAGCAGTAGCACAGTTCATCAATTCACTTTCGCCAATAGATACGGTATGCCTGCTCCCGTCCATCTACAGCTAAGACAGCCACAACCACAAAACAACGAAACATCAATACCAGGGATAAAGCTGGGACCAGACTCTGAAGTTGCGATGCCAATTAGCTGA 678 42.92 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDADVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKEEQNQLMNPVSELQFWKREAAGLKQQLHYMQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSEEITQLRQKVPPTVNIHVYGPMEVDKTSSSTVHQFTFANRYGMPAPVHLQLRQPQPQNNETSIPGIKLGPDSEVAMPIS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1313922 1323081 + CmaCh16G002810.1 Cma16g00281 310879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00281 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 MobiDBLite consensus disorder prediction 200 225 - -
Cma16g00281 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 155 - -
Cma16g00281 225 ProSiteProfiles K-box domain profile. 86 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma16g00281 225 PANTHER - 163 208 - -
Cma16g00281 225 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Cma16g00281 225 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma16g00281 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 163 208 - -
Cma16g00281 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma16g00281 225 PANTHER - 1 155 - -
Cma16g00281 225 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cma16g00281 225 Pfam K-box region 84 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma16g00281 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00600 Cma-Chr9:2804731 Cma16g00281 Cma-Chr16:1313922 7.62E-84 dispersed
Cma16g00281 Cma-Chr16:1313922 Cma07g00152 Cma-Chr7:778548 2.09E-46 dispersed
Cma16g00276 Cma-Chr16:1285453 Cma16g00281 Cma-Chr16:1313922 1.99E-36 proximal
Cma10g01184 Cma-Chr10:8702422 Cma16g00281 Cma-Chr16:1313922 1.01E-10 transposed
Cma16g00281 Cma-Chr16:1313922 Cma03g00854 Cma-Chr3:6379767 4.76E-69 wgd
Cma16g00281 Cma-Chr16:1313922 Cma04g00409 Cma-Chr4:2097635 5.06E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36520 PF01486 K-box 2.80E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00281 K09264 - csv:101203098 340.117