Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00312 ATGGGTGCTCCGAAGCAGAAATGGACTAACGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTATATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTGATGGCTAATGGTTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACATTTTGGCTCGAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAATCTGTTTCTCTTTCCTCGGATATCAAGCTGATAGCTGGTCCAAAGCGATCTAATGTAAGAAAAGAAGAAGAGGAGGAAGAAGAAGACGATGATGATGAAGAAGAAGAAACGGAAGCAGAAAGAACAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTCATAATTGAGGCAATTACTACCTTGAGGGAACCTGGGGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCACCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGATGCCTTCGTCAGAGAGAAGGAGCTCTATGTTATTCTTGGACGACCAGCAAAGAGCTTCTTTAAGAGCTGACAAGGACGAAATGTGTATTCTTGCTAAAGCTCAAATCGATCTTGAATTAGCCAAGATGAGAACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCGCATGCAGTTGCAGAAGCAGAAGCAGCTATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCGGCTGAGGCCGATGCAGAAGCAGCACAATCATTTGCTGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTTCCAAAGATGATGATTCGGGTTTGA 990 44.14 MGAPKQKWTNEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENILARSVAVQSEDELPEAKSVSLSSDIKLIAGPKRSNVRKEEEEEEEDDDDEEEETEAERTERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRKYRLPPVMPSSERRSSMLFLDDQQRASLRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAAHAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1455421 1461512 + CmaCh16G003120.1 Cma16g00312 310910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00312 329 SMART h15plus2 148 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 Gene3D - 151 227 IPR036388 -
Cma16g00312 329 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 326 - -
Cma16g00312 329 PANTHER SINGLE MYB HISTONE 4 1 326 IPR044597 GO:0003691
Cma16g00312 329 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Cma16g00312 329 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cma16g00312 329 SMART sant 4 59 IPR001005 -
Cma16g00312 329 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cma16g00312 329 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 MobiDBLite consensus disorder prediction 117 147 - -
Cma16g00312 329 Pfam linker histone H1 and H5 family 156 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 Coils Coil 118 142 - -
Cma16g00312 329 SUPERFAMILY Winged helix DNA-binding domain 151 226 IPR036390 -
Cma16g00312 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cma16g00312 329 Gene3D - 2 59 - -
Cma16g00312 329 Coils Coil 272 309 - -
Cma16g00312 329 MobiDBLite consensus disorder prediction 125 141 - -
Cma16g00312 329 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00647 Cma-Chr7:2809788 Cma16g00312 Cma-Chr16:1455421 6.05E-79 dispersed
Cma14g01253 Cma-Chr14:9933174 Cma16g00312 Cma-Chr16:1455421 1.25E-32 dispersed
Cma16g00312 Cma-Chr16:1455421 Cma20g00308 Cma-Chr20:1512446 4.68E-06 dispersed
Cma19g00063 Cma-Chr19:351666 Cma16g00312 Cma-Chr16:1455421 1.40E-09 dispersed
Cma04g00444 Cma-Chr4:2269979 Cma16g00312 Cma-Chr16:1455421 1.15E-26 transposed
Cma16g00312 Cma-Chr16:1455421 Cma03g00911 Cma-Chr3:6605105 8.79E-77 wgd
Cma16g00312 Cma-Chr16:1455421 Cma04g00443 Cma-Chr4:2265920 4.70E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36521 PF00538 Linker_histone 1.60E-08 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00312 K09422 - csv:101218411 464.922