Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00312 ATGGGTGCTCCGAAGCAGAAATGGACTAACGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTATATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTGATGGCTAATGGTTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACATTTTGGCTCGAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAATCTGTTTCTCTTTCCTCGGATATCAAGCTGATAGCTGGTCCAAAGCGATCTAATGTAAGAAAAGAAGAAGAGGAGGAAGAAGAAGACGATGATGATGAAGAAGAAGAAACGGAAGCAGAAAGAACAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTCATAATTGAGGCAATTACTACCTTGAGGGAACCTGGGGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCACCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGATGCCTTCGTCAGAGAGAAGGAGCTCTATGTTATTCTTGGACGACCAGCAAAGAGCTTCTTTAAGAGCTGACAAGGACGAAATGTGTATTCTTGCTAAAGCTCAAATCGATCTTGAATTAGCCAAGATGAGAACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCGCATGCAGTTGCAGAAGCAGAAGCAGCTATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCGGCTGAGGCCGATGCAGAAGCAGCACAATCATTTGCTGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTTCCAAAGATGATGATTCGGGTTTGA 990 44.14 MGAPKQKWTNEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENILARSVAVQSEDELPEAKSVSLSSDIKLIAGPKRSNVRKEEEEEEEDDDDEEEETEAERTERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRKYRLPPVMPSSERRSSMLFLDDQQRASLRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAAHAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1455421 1461512 + CmaCh16G003120.1 Cma16g00312 310910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00312 329 SMART h15plus2 148 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 Gene3D - 151 227 IPR036388 -
Cma16g00312 329 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 326 - -
Cma16g00312 329 PANTHER SINGLE MYB HISTONE 4 1 326 IPR044597 GO:0003691
Cma16g00312 329 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Cma16g00312 329 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cma16g00312 329 SMART sant 4 59 IPR001005 -
Cma16g00312 329 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cma16g00312 329 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 MobiDBLite consensus disorder prediction 117 147 - -
Cma16g00312 329 Pfam linker histone H1 and H5 family 156 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma16g00312 329 Coils Coil 118 142 - -
Cma16g00312 329 SUPERFAMILY Winged helix DNA-binding domain 151 226 IPR036390 -
Cma16g00312 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cma16g00312 329 Gene3D - 2 59 - -
Cma16g00312 329 Coils Coil 272 309 - -
Cma16g00312 329 MobiDBLite consensus disorder prediction 125 141 - -
Cma16g00312 329 CDD SANT_TRF 6 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00312 K09422 MYBP; transcription factor MYB, plant - csv:101218411 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00647 Cma-Chr7:2809788 Cma16g00312 Cma-Chr16:1455421 6.05E-79 dispersed
Cma14g01253 Cma-Chr14:9933174 Cma16g00312 Cma-Chr16:1455421 1.25E-32 dispersed
Cma16g00312 Cma-Chr16:1455421 Cma20g00308 Cma-Chr20:1512446 4.68E-06 dispersed
Cma19g00063 Cma-Chr19:351666 Cma16g00312 Cma-Chr16:1455421 1.40E-09 dispersed
Cma04g00444 Cma-Chr4:2269979 Cma16g00312 Cma-Chr16:1455421 1.15E-26 transposed
Cma16g00312 Cma-Chr16:1455421 Cma03g00911 Cma-Chr3:6605105 8.79E-77 wgd
Cma16g00312 Cma-Chr16:1455421 Cma04g00443 Cma-Chr4:2265920 4.70E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00312 . 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 61.2 2.1e-77 286.6
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 6.6e-63 238.4
Cma07g00647 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.2 3.4e-59 226.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 8.3e-66 248.1
Cma07g00647 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 52.9 1.8e-65 246.9
Cma07g00647 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 1.1e-57 221.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 4.1e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36521 PF00538 Linker_histone 1.60E-08 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00312 Cma_Chr16 FPKM 16.967592 16.801067 18.3953 16.799515 20.121586 18.474781 20.130148 21.399 26.059526 23.92662