Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00324 | ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCAGTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTTCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCAGTTCGAGCTCGGCCGTCCCGTCTGCTTGTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAATAATCCTTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCAAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCATGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCGCCGACACCCGTTGACACCAACTCAAGGAAGCGGTCCCTGAGTTCGTATAATGTCGAAAAGACGAAGACGAGTACGAGGAACACAAGGGCACGAAAGAGCTCGAAGATTGCTTCGGCTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGATTGTAATGGTGGAATCACTCCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTTGATATCAGCACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACACGACAATGCATCACAATAG | 963 | 46.42 | MEPIGPISEREWISLSGAYTAEESDFMANFLNNYCLPNELNPSSSSAVPSACLAMAPMDEPSYYNNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEIMVEEATKDDKVAPTPVDTNSRKRSLSSYNVEKTKTSTRNTRARKSSKIASASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITPSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKHDNASQ | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1521773 | 1523263 | - | CmaCh16G003240.1 | Cma16g00324 | 310922 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00324 | 320 | MobiDBLite | consensus disorder prediction | 137 | 188 | - | - | |
Cma16g00324 | 320 | Pfam | Helix-loop-helix DNA-binding domain | 242 | 282 | IPR011598 | GO:0046983 | |
Cma16g00324 | 320 | MobiDBLite | consensus disorder prediction | 211 | 240 | - | - | |
Cma16g00324 | 320 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 317 | - | - | |
Cma16g00324 | 320 | MobiDBLite | consensus disorder prediction | 150 | 168 | - | - | |
Cma16g00324 | 320 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 232 | 298 | IPR036638 | GO:0046983 | |
Cma16g00324 | 320 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 5 | 317 | - | - | |
Cma16g00324 | 320 | CDD | bHLH_AtIND_like | 233 | 295 | - | - | |
Cma16g00324 | 320 | SMART | finulus | 238 | 287 | IPR011598 | GO:0046983 | |
Cma16g00324 | 320 | Coils | Coil | 318 | 320 | - | - | |
Cma16g00324 | 320 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 232 | 281 | IPR011598 | GO:0046983 | |
Cma16g00324 | 320 | MobiDBLite | consensus disorder prediction | 211 | 236 | - | - | |
Cma16g00324 | 320 | Gene3D | - | 232 | 289 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00143 | Cma-Chr5:640612 | Cma16g00324 | Cma-Chr16:1521773 | 2.47E-55 | dispersed | |
Cma12g00596 | Cma-Chr12:3109902 | Cma16g00324 | Cma-Chr16:1521773 | 3.78E-55 | dispersed | |
Cma16g00324 | Cma-Chr16:1521773 | Cma10g00480 | Cma-Chr10:2188836 | 1.75E-20 | dispersed | |
Cma11g01701 | Cma-Chr11:11238101 | Cma16g00324 | Cma-Chr16:1521773 | 2.25E-62 | wgd | |
Cma16g00324 | Cma-Chr16:1521773 | Cma19g00554 | Cma-Chr19:6318015 | 3.37E-51 | wgd | |
Cma16g00324 | Cma-Chr16:1521773 | Cma04g00451 | Cma-Chr4:2305604 | 2.34E-114 | wgd | |
Cma16g00324 | Cma-Chr16:1521773 | Cma09g00285 | Cma-Chr9:1167219 | 2.46E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36522 | PF00010 | HLH | 3.30E-09 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00324 | - | - | cpep:111810674 | 601.282 |