Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00324 ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCAGTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTTCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCAGTTCGAGCTCGGCCGTCCCGTCTGCTTGTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAATAATCCTTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAGGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCAAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCATGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCGCCGACACCCGTTGACACCAACTCAAGGAAGCGGTCCCTGAGTTCGTATAATGTCGAAAAGACGAAGACGAGTACGAGGAACACAAGGGCACGAAAGAGCTCGAAGATTGCTTCGGCTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGATTGTAATGGTGGAATCACTCCCAGCTCAACCCTGAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTTGATATCAGCACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACACGACAATGCATCACAATAG 963 46.42 MEPIGPISEREWISLSGAYTAEESDFMANFLNNYCLPNELNPSSSSAVPSACLAMAPMDEPSYYNNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEIMVEEATKDDKVAPTPVDTNSRKRSLSSYNVEKTKTSTRNTRARKSSKIASASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITPSSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKHDNASQ 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1521773 1523263 - CmaCh16G003240.1 Cma16g00324 310922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00324 320 MobiDBLite consensus disorder prediction 137 188 - -
Cma16g00324 320 Pfam Helix-loop-helix DNA-binding domain 242 282 IPR011598 GO:0046983
Cma16g00324 320 MobiDBLite consensus disorder prediction 211 240 - -
Cma16g00324 320 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 317 - -
Cma16g00324 320 MobiDBLite consensus disorder prediction 150 168 - -
Cma16g00324 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 298 IPR036638 GO:0046983
Cma16g00324 320 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 5 317 - -
Cma16g00324 320 CDD bHLH_AtIND_like 233 295 - -
Cma16g00324 320 SMART finulus 238 287 IPR011598 GO:0046983
Cma16g00324 320 Coils Coil 318 320 - -
Cma16g00324 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Cma16g00324 320 MobiDBLite consensus disorder prediction 211 236 - -
Cma16g00324 320 Gene3D - 232 289 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00143 Cma-Chr5:640612 Cma16g00324 Cma-Chr16:1521773 2.47E-55 dispersed
Cma12g00596 Cma-Chr12:3109902 Cma16g00324 Cma-Chr16:1521773 3.78E-55 dispersed
Cma16g00324 Cma-Chr16:1521773 Cma10g00480 Cma-Chr10:2188836 1.75E-20 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma16g00324 Cma-Chr16:1521773 2.25E-62 wgd
Cma16g00324 Cma-Chr16:1521773 Cma19g00554 Cma-Chr19:6318015 3.37E-51 wgd
Cma16g00324 Cma-Chr16:1521773 Cma04g00451 Cma-Chr4:2305604 2.34E-114 wgd
Cma16g00324 Cma-Chr16:1521773 Cma09g00285 Cma-Chr9:1167219 2.46E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36522 PF00010 HLH 3.30E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00324 - - cpep:111810674 601.282