Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00342 ATGGGCAGCATTGAATCCGACAGAACCGTTACCGGTCTCGCCGCCAAAGACCCATCTGGGATTCTGTCTCCCTACACTTATACTCTCCGAAACACCGGCCCGGATGATGTTTTCATTAAAGTGATTTGCTGTGGAATCTGTCACTCCGATCTTCACCAAATCAAGAATGAACTCGGCATGTCCAATTACCCCATGGTTCCTGGACATGAAGCGGTCGGAGAAGTGGTTGAGGTTGGATCGGAAGTGAGTCGATTCAGAGTAGGGGATTTGGTCGGAGTTGGGTGTATTGTTGGATCCTGTTCGAGTTGCGGTCCTTGTAGTTCCGATAAGGAGCAGTACTGTAACAAGAAGATCTGGACCTATAATGATGTGTATCTCGACGGCCGACCCACTCAAGGTGGTTTCTCCTCCGCCATGGTCGTGCACCAAAAGTTTGTGGTGAAAATCCCTGAAGGGATGTCCCCGGAGCAGGCGGCGCCGCTGTTGTGCGCGGGAGTGACGGTGTACAGCCCACTGAACCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGTCTGGGCGGCGTTGGGCATATGGGCGTGCAAGTGGCGAAGGGTTTAGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGAAGGAAGCTCTGGAACATCTCGGCGCAGACGAGTACTTGGTCAGCTCCGACGCAACTCAAATGGAACGAGCCATAGGCTCACTGGATTACATCATCGACACAGTCCCTGTTTTTCATCCGCTCGAGCCGTACCTCTCTCTGTTAAAAATCGATGGCAAATTGATCATGCTAGGTGTCATTAACACCCCAATGCAATTCGTTTCGCCTCTCCTTATGCTCGGGAGGAAGACGATTGCCGGGACCTTCATCGGAAGCATGACGGAGATGCAAGAGGTGTTGTATTTCTTCAAAGAGAAGGAGCTGACCTCCACGATTGAAGTGGTAAAGCTGGATTACATAAACAAGGCTCTGGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTTGTCGATGTAGCCGGAAGTAAGTTCCCGGAGTGA 1074 51.3 MGSIESDRTVTGLAAKDPSGILSPYTYTLRNTGPDDVFIKVICCGICHSDLHQIKNELGMSNYPMVPGHEAVGEVVEVGSEVSRFRVGDLVGVGCIVGSCSSCGPCSSDKEQYCNKKIWTYNDVYLDGRPTQGGFSSAMVVHQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVQVAKGLGHHVTVISSSEKKRKEALEHLGADEYLVSSDATQMERAIGSLDYIIDTVPVFHPLEPYLSLLKIDGKLIMLGVINTPMQFVSPLLMLGRKTIAGTFIGSMTEMQEVLYFFKEKELTSTIEVVKLDYINKALERLEKNDVRYRFVVDVAGSKFPE 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1603529 1605429 + CmaCh16G003420.1 Cma16g00342 310940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00342 357 CDD CAD1 11 349 - -
Cma16g00342 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cma16g00342 357 Pfam Zinc-binding dehydrogenase 191 313 IPR013149 -
Cma16g00342 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Cma16g00342 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
Cma16g00342 357 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Cma16g00342 357 Gene3D - 14 350 - -
Cma16g00342 357 PANTHER ALDEHYDE REDUCTASE 5 355 - -
Cma16g00342 357 Gene3D - 164 320 - -
Cma16g00342 357 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 5 355 - -
Cma16g00342 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00342 Cma-Chr16:1603529 Cma20g01080 Cma-Chr20:8298392 6.82E-119 dispersed
Cma11g01723 Cma-Chr11:11428029 Cma16g00342 Cma-Chr16:1603529 0 wgd
Cma16g00342 Cma-Chr16:1603529 Cma04g00470 Cma-Chr4:2402661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00342 K00083 - csv:101222395 593.578