Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00345 ATGATCAGTAACTTCACAAGAATATGCAGGGGCAGATTGGCTGGCTTTTTCAACAGGATGATCAGTATATCTGAAGATTTGATCAGAGGCATTGAGATTTCTTTTAAAAGAGATGAACTTCAGAATTCTAGATCTCTTAGAAAGTTGTGGTGTAATGACAGAGAAAATGATCCATCTCATGAAAAGCAGATGAAGCTTGTGCAGATCCAAAGGACGAAAGCTGAAGACAAAGGGGATGCATGCATGCGTCTATTAGGGAGACCAATTACTTGCTGGAAAACAGGTTGGAACTTAGGAACGAGGAATTTCGCTACTTTTGTAGCTTCCCATCTCCTTCTTCCTTCTGATGGAAATGATTTTGTTATAGAACCCAGAAATATGATGCAAGATCTGTTGCAGAACAGGAATCCATGGAGCTTCTTCGATGCCACTTACAAGGCTCTGTTTTGGAGCTTCACTTTCTTTTTCCCTCTCCTTCATTTTCCCTCTTTTGCTCTTAACAGCGATGGCGCCCTCTTGTTGTCTCTCAAACGCTCCATTCTCGGCGATCCCTTGTCTGTTTTCGCGAATTGGAATGTTTATGATGCGACACCCTGTTCTTGGCATGGAGTCACCTGCACCGACCTCCGTGGCTATGGCGGCGGATGGCCGGATTTGCTCAGAGTCACTGCCGTCTCACTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTTGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCGGTTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTTTCGAACAATGTAATCTCCGGGGAGTTGCCGGCGGAATTTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTGTCTGATAATGCGTTGGCCGGGAAATTGCCGGGAAATCTCTCTGCTTTGAAGAATCTCACCGTCGTTTCTCTGAGGAGTAATTATTTCGCCGGAGAGATTCCTGGGAATTTCAGTTGGGTTGAGGTTTTGGATTTGTCTTCTAATTTGCTCAATGGGTCTTTGCCGGCGGATTTTGGTGGGGAGAAACTACGGTATTTGAACTTCTCTTACAATAAAATTTCAGGTCCCGTTCCACCGGAGTTCGCGAAGTGGATTCCGGCGAATGCGACGATGGATCTCTCTTTCAACAATCTCACCGGAGCGATTCCTCAGTCGGCTGCTCTGCTCAGCCAGAAAACAGAGGCGTTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCGATTCATTCCTCTCTAACAACTCCCCCAAATGTTTCTGAAATTTCATCTTCTTCTCCGGCAATCGCCGCCATACCAAAAACAATCGTCTCTATTCCAGCAACAAAGTCCCCCGGAGGTCCGAACGGGACGCAAACTTCTCAGCCGCAAAACACCATGAAACCCATCACAATAGCCGCAATTGCGGTCGGAGACCTTGCTGGAATCACCATTCTGGCCATCGGGATTCTCTACGTCTACCATCACCGGAAACAAACAAATCCAAATTCCAAAACCTCCAAATCCGCCGAGAAGAAGCCGCCGATTGGCTCAGACCAAGACCACCAAAACAACCAAAGAAAACCCTCATCGGCGTTGTTCTGTTTGGCCAACAAAGGAGAAGATACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAGCAGAGGGAGAAATCCGGAGCAAACCACGGCGGAGTGAACAGAGACAGTGAGAAAAACGGCGTGCTGGTGACATTGGACGGAGAAACAGAGATGGAATTGGAGACATTGTTAAAGGCGTCAGCATATATACTTGGAGCAAGCGGCGGAAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACGGCGTTCGCCGTCAGAAGGATCGGCGACGTCAACTTTGAGAGATTGAGGGATTTCGAGGCGCAAATGAGAGCCATTGCTAAGCTCCGACATCAAAATTTGGTGAAAATTCGCGGGTTCTTTTGGGGAGAAGATGAAAAGCTCATAATCTATGATTACGTCTCCAATGGCTGCCTTGCAACCTCCCTTCACAAAAAACCGAGTTCATCGTCTTCTTCCCATATCCATCTATCATTTGAAGTCCGACTGAAAATCGCAAGAGGAATCGCCAGAGGAATGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTGAAGCCTTCCAACATCCTGTTAAACGCCGACATGGAGCCCTTAATCACCGATCTCGGCCTCAACAAGCTCCTCTCCCGCAGTTCCAAGATCGCCTTCGCCTCCACTTCATCCCGGAACTTCGGCAGCCACAGATCCACGCCGAATCGCGATCACCATGACGGCGGTGGTGGAGGGAGCCCCGCGGTGAGCGTGGGATCGGCGTACCAGGCGCCGGAATCGCTGAAGAATCTGAAACCGAGCCCTAAATGGGACGTGTACTCGTTCGGGTTGATTCTGGTGGAGCTTCTGAGCGGGAAAATTGTGAGGGAGAGGGAGGGCGGCATTGAAGACGAGGGGCGGATGAAGAAGATGGTGGATCCGACGATTAGAGGGGAATTGGAAGGGAAAGAGGAGGCGATCTTCCTTGTCCTCTCTCCGACCTCCGTTGTTCAGCCGGTGGTTTTTTCATTCCGACGAGAAATGGCTACTTTCGCTTCGTTTACGCTCCGCAGGCCGGCGCTTGGGAACTCGGTATTTTCTTCTCTGTCTTCTAAAATTCCTGTTTCTTCCGCTTTTTCTGTTGATCTTCGTCGACGGAGTGTTGGCGCGTCGCGGTTTGTGGTGTTGGTTTCTGCGTCTATGGATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGTGAAGCGGGTCTTGATCTTCTAAAGGATTTTGCTAATGTTGATTGCTCGTATAATCTGAGTCCTGAGGAGCTTTGCACCAAGATCTCTCTCTGTGATGCGATTATTGTGCGGAGTGGGACTAAGGTCAGCCGTGAAGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGGGCTGGTGTTGGCATTGACAACGTGGATCTGGCGGCTGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCGACTGCAAACACGGTAGCCGCCGCTGAGCACGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCTCAAGCCGATGCGTCTGTTAAAGCTGGAAAGTGGCAACGCAACAAATATGTCGGTGTCTCGCTTGTGGGGAAAACACTGGCTGTGATGGGATTCGGCAAAGTCGGAACTGAAGTTGCTCGGCGGGCAAAGGGACTTGGCATGCATGTAATTGCACACGACCCATATGCCCCAGCTGATCGTGCTCGTGCGATAGGCGTAGAGCTTGTGAGCTTTGACGAAGCCATTGGAACTGCTGATTTCATCTCTTTGCATATGCCTTTAACTCCAGCCACGTCAAAGATCCTTAATGATGAAAATTTCGCAAAGATGAAGAAAGGAGTAAGGATTGTGAATGTCGCCCGTGGAGGCGTAATTGATGAAGAAGCTCTTGTAAGGGCGCTAGATGCTGGAATTGTTGCTCAGGCTGCACTTGATGTTTTCACCGAGGAGCCACCTCCTAAAGATAGCAAGTTGATTCAGCATGAGAATGTCACTGTAACTCCTCATCTCGGTGCCAGCACAATGGAGGCTCAGGAAGGAGTTGCTGTTGAAATAGCTGAAGCTGTTGTTGGAGCCTTGAAAGGGGAGCTTGCAGCTACTGCCGTCAATGCTCCGATGGTTCCTGCAGAGGTGTTAACGGAGCTGAAACCATTTGTTGAACTTGCTGAGAAATTGGGAAGGCTGGCTGTCCAATTGGTAGCAGGAGGAAGTGGTGTGAAAACTGTGAAAGTAACATACGCTTCCTCTAGAGCTCCTGATGATCTTGACACCAGGCTTCTTCGTGCCATGATAACCAAAGGTCTCATAGAACCAATTTCCAGCGTTTTCGTGAACTTGGTGAACGCTGACTTCACCGCCAAACAAAGAGGACTAAGGATATCCGAGGAGCGAGTTATTCTGGATGGGTCGCCCGAGAAACCATTAGAGTACATACAGGTCCAGATTGCCAACGTGGAATCCAAATTTGCCAGTGCTATATCGGATTCTGGGGAGATAACGGTGGAAGGACTTGTGAAAGACGGAATCCCTCACCTCACAAAGGTCGGGTCTTTCGAAGTCGATGTTAGTTTGGAGGGTAGCATCATACTCTGTAGGCAGGTTGACCAGCCAGGTATGATTGGAACGGTTGGAAGCATTCTCGGAGAAGAAAATGTTAATGTGAGCTTCATGAGTGTTGGAAGGATTGCTCCTCGAAAGCAGGCTGTTATGGCCATTGGTGTCGATGAACAGCCCAGCAAGGAATCCTTGAAGAGGATCGGTGATGTTCCAGCAATTGAAGAGTTTGTTTTCCTCAAGCTGTAG 4467 49.25 MISNFTRICRGRLAGFFNRMISISEDLIRGIEISFKRDELQNSRSLRKLWCNDRENDPSHEKQMKLVQIQRTKAEDKGDACMRLLGRPITCWKTGWNLGTRNFATFVASHLLLPSDGNDFVIEPRNMMQDLLQNRNPWSFFDATYKALFWSFTFFFPLLHFPSFALNSDGALLLSLKRSILGDPLSVFANWNVYDATPCSWHGVTCTDLRGYGGGWPDLLRVTAVSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPVSIFNASELQILSLSNNVISGELPAEFGGLKSLQVLNLSDNALAGKLPGNLSALKNLTVVSLRSNYFAGEIPGNFSWVEVLDLSSNLLNGSLPADFGGEKLRYLNFSYNKISGPVPPEFAKWIPANATMDLSFNNLTGAIPQSAALLSQKTEAFAGNEDLCGKPLKHLCSIHSSLTTPPNVSEISSSSPAIAAIPKTIVSIPATKSPGGPNGTQTSQPQNTMKPITIAAIAVGDLAGITILAIGILYVYHHRKQTNPNSKTSKSAEKKPPIGSDQDHQNNQRKPSSALFCLANKGEDTSEATSSSDGEEQREKSGANHGGVNRDSEKNGVLVTLDGETEMELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVNFERLRDFEAQMRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLATSLHKKPSSSSSSHIHLSFEVRLKIARGIARGMAFIHDKKHIHGNLKPSNILLNADMEPLITDLGLNKLLSRSSKIAFASTSSRNFGSHRSTPNRDHHDGGGGGSPAVSVGSAYQAPESLKNLKPSPKWDVYSFGLILVELLSGKIVREREGGIEDEGRMKKMVDPTIRGELEGKEEAIFLVLSPTSVVQPVVFSFRREMATFASFTLRRPALGNSVFSSLSSKIPVSSAFSVDLRRRSVGASRFVVLVSASMDAKPTVLVAEKLGEAGLDLLKDFANVDCSYNLSPEELCTKISLCDAIIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIGTADFISLHMPLTPATSKILNDENFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLIQHENVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRISEERVILDGSPEKPLEYIQVQIANVESKFASAISDSGEITVEGLVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKRIGDVPAIEEFVFLKL 1488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1611109 1624212 + CmaCh16G003450.1 Cma16g00345 310943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00345 1488 Gene3D - 1042 1224 - -
Cma16g00345 1488 Gene3D Ribonuclease Inhibitor 337 432 IPR032675 -
Cma16g00345 1488 Gene3D - 951 1251 - -
Cma16g00345 1488 MobiDBLite consensus disorder prediction 771 801 - -
Cma16g00345 1488 CDD PGDH_4 949 1251 - -
Cma16g00345 1488 SUPERFAMILY Serine metabolism enzymes domain 1264 1410 IPR029009 -
Cma16g00345 1488 Pfam Leucine rich repeat N-terminal domain 167 206 IPR013210 -
Cma16g00345 1488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1045 1227 IPR036291 -
Cma16g00345 1488 SUPERFAMILY L domain-like 167 428 - -
Cma16g00345 1488 Gene3D Phosphorylase Kinase; domain 1 581 683 - -
Cma16g00345 1488 ProSiteProfiles ACT domain profile. 1416 1488 IPR002912 -
Cma16g00345 1488 Gene3D - 1263 1414 IPR029009 -
Cma16g00345 1488 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 1165 1181 IPR029753 -
Cma16g00345 1488 MobiDBLite consensus disorder prediction 556 589 - -
Cma16g00345 1488 Gene3D Transferase(Phosphotransferase) domain 1 684 879 - -
Cma16g00345 1488 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 925 1483 - -
Cma16g00345 1488 TIGRFAM PGDH: phosphoglycerate dehydrogenase 949 1486 IPR006236 GO:0004617|GO:0006564
Cma16g00345 1488 PANTHER FORMATE DEHYDROGENASE 1 925 1483 - -
Cma16g00345 1488 MobiDBLite consensus disorder prediction 565 581 - -
Cma16g00345 1488 SMART AdoHcyase_NAD_2 1076 1245 IPR015878 -
Cma16g00345 1488 Gene3D Ribonuclease Inhibitor 166 336 IPR032675 -
Cma16g00345 1488 Pfam Leucine rich repeat 245 304 IPR001611 GO:0005515
Cma16g00345 1488 Pfam Protein kinase domain 614 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00345 1488 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 1051 1226 IPR006140 GO:0051287
Cma16g00345 1488 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 1136 1158 IPR029753 -
Cma16g00345 1488 SUPERFAMILY Protein kinase-like (PK-like) 613 839 IPR011009 -
Cma16g00345 1488 Gene3D - 1415 1488 - -
Cma16g00345 1488 CDD ACT_3PGDH-xct 1417 1488 - -
Cma16g00345 1488 Pfam ACT domain 1416 1477 IPR002912 -
Cma16g00345 1488 MobiDBLite consensus disorder prediction 516 544 - -
Cma16g00345 1488 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 946 1079 - -
Cma16g00345 1488 ProSiteProfiles Protein kinase domain profile. 608 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00345 1488 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 949 1258 IPR006139 GO:0016616|GO:0051287
Cma16g00345 1488 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 1088 1115 IPR029752 -
Cma16g00345 1488 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 1269 1376 IPR045626 -
Cma16g00345 1488 SUPERFAMILY ACT-like 1406 1484 IPR045865 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00974 Cma-Chr1:6690566 Cma16g00345 Cma-Chr16:1611109 1.68E-26 dispersed
Cma14g00647 Cma-Chr14:3225712 Cma16g00345 Cma-Chr16:1611109 1.07E-27 dispersed
Cma14g01230 Cma-Chr14:9762922 Cma16g00345 Cma-Chr16:1611109 0 dispersed
Cma16g00345 Cma-Chr16:1611109 Cma20g00971 Cma-Chr20:4949033 0 dispersed
Cma04g00475 Cma-Chr4:2422480 Cma16g00345 Cma-Chr16:1611109 0 transposed
Cma16g00345 Cma-Chr16:1611109 Cma04g00474 Cma-Chr4:2417923 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69186 PF00389 2-Hacid_dh 4.60E-34 CL0325 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00345 K00058 - cmax:111478916 1120.92