Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00351 ATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTCAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGCGTTTGCCGAGACTTGACGACCCGACGATCTCTTGGTTATGGTTATGTAAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGTCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTTCGTAGGACCCTTTCTTCGTAAGCAAGAAAGAGACGGCGTTGTTGACAAGTCGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATATTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATTAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTTGGGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAATTCTCTCAAATACGGCCAGTTTCGATGGCTGCTTCAGTTGCCCCTCGGATGCCAATGTATCCCCCGGGTGGTCCAGGTATCGGACAGCAGTTGTTTTATGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGCGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCCGGTGGAGGTCCAATGCCGAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAAACCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGGCGTGTCTACCGCTATCCCCCAGGAAGAGGTATGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGAAATGGGAGGCATGCCAATGCCATTGCGTGATGCGGCACATTCTCAACCCATCCCTATAGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACGATGCTGGGGGAGAATCTGTACCCGCTCGTGGAACAGTTGGAGCCCGACAATGCAGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCGAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCAGCCCAGCAGCAGCAAGCTGGGAACACAGCTGATCAGCTAGCCTCTCTGTCGCTGACAGAGAACCTCGTGTCGTGA 1968 46.95 MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVFVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDIFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASWALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVSMAASVAPRMPMYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQNQQPVPMMQQQMLPRGGRVYRYPPGRGMPDVPMPGVAGGMFSVPYEMGGMPMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNTADQLASLSLTENLVS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1656513 1661381 + CmaCh16G003510.1 Cma16g00351 310949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00351 655 Gene3D - 294 396 IPR012677 -
Cma16g00351 655 CDD RRM1_I_PABPs 30 109 - -
Cma16g00351 655 Gene3D - 118 197 IPR012677 -
Cma16g00351 655 PANTHER POLYADENYLATE-BINDING PROTEIN 18 636 - -
Cma16g00351 655 PANTHER RNA BINDING PROTEIN 18 636 - -
Cma16g00351 655 Gene3D - 550 631 - -
Cma16g00351 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cma16g00351 655 Gene3D - 1 117 IPR012677 -
Cma16g00351 655 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cma16g00351 655 SUPERFAMILY PABC (PABP) domain 495 646 IPR036053 GO:0003723
Cma16g00351 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cma16g00351 655 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Cma16g00351 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cma16g00351 655 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cma16g00351 655 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cma16g00351 655 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cma16g00351 655 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cma16g00351 655 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Cma16g00351 655 CDD RRM4_I_PABPs 310 388 - -
Cma16g00351 655 Gene3D - 198 293 IPR012677 -
Cma16g00351 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Cma16g00351 655 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cma16g00351 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cma16g00351 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cma16g00351 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Cma16g00351 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cma16g00351 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cma16g00351 655 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 627 IPR006515 GO:0003723
Cma16g00351 655 SMART poly_2 566 629 IPR002004 GO:0003723
Cma16g00351 655 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cma16g00351 655 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cma16g00351 655 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cma16g00351 655 SMART rrm1_1 30 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00351 Cma-Chr16:1656513 Cma13g00733 Cma-Chr13:6499464 7.72E-07 dispersed
Cma11g01739 Cma-Chr11:11541978 Cma16g00351 Cma-Chr16:1656513 0 wgd
Cma16g00351 Cma-Chr16:1656513 Cma19g00596 Cma-Chr19:6565911 0 wgd
Cma16g00351 Cma-Chr16:1656513 Cma04g00481 Cma-Chr4:2449726 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00351 K13126 - csv:101219802 1171.38