Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00354 ATGGCGGCGGCCACCGCACTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTATTTCTTCAGCTGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGTTCTAACCCCAACGAAAGAGGGAAGTGCTGTCGCTATATCAATGCATTTGTTGCAGTTTCTGTGGCTCAGCTTGCAAATTCAACTGGTGAACTAGGAGTTTCTTCAAACTTAACCAACATTTGCCTGCAATCTATATCTCAAACCATGGAACTCTATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACGAAAATTCCAGTAAACTACGCGTGTAGAGGCCGAGAAACCGTCACGCAGATGCTGGAATCTCCGAAGTTTACGAAAGTTGGGGAGAATTGCAGATTGCTGCTATCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTCCGCAATCTTATTGGGAGAGAAGATAATATAACATTGAATACCTGTCGTGATGCTACGTTTGTTGCACTTGCTAGCCAACTTGATGCTGCTTCAGTGATTGATCTTGCAAGCTGCTTCTTTGGAGTTCAAGGTCTTAACAGGCCTCCAGCTCCACCTCCATCTTTGGCTACACCGGATATTTCCCCAAGTCCATCAGCTGCTGCAAGTCCCGGGCCACTGGCGCTAGGTGTTTCTGATGGTAAACGTCATCGACATCATTCCTACCATGTAACATTAGTGGCAGGTATTGGCATTGCAGTGACTGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATCCGAAGGAAAAGCAGAGAGCTAAAGGATTCCGAGAAGACGGATGCGAACTCTTCAAGATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGAGGATACGGGACTGTTTATAAAGCTCAATTCAATGAAGACTTAGTGCTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGGGAGGATGAATTTGGCAGAGAAATTGAGCTGCTTGCGAGATTACATCACCGACATCTCGTTGCTTTAAGAGGCTTTTGTGTCGAAAAGCATGAACGGTTTCTTGTTTACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCAGACAAGAATCCAAATCGCCATCGATGTCGCTAATGCTCTGGAGTACCTTCACTACTATTGTGATCCCCCACTATGTCATAGAGACATTAAGTCCAGCAACATTTTGCTGGATGAGAACTTTGTTGCTAAGGTTGCCGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCGGTTTTCTTTGAACCCATTAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACGCAAGAGCTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGGGCGATACAAGACGGGAAGAACTTGGTTGAATGGTCCCTGGCGTACATGATTTCAGATTCGAGGATATCCGAACTAGTAGATTCAAGTATCAAGAGTTCTTTTAATTTGGACCAACTTCACACAGTGGTGTCAATTGTGAGATGGTGCACTGAGGGAGAAGGCAGGACGAGGCCCTCGATTAAACAGGTGCTTCGTCTATTGTACGAGAGTTCGGACCCGATGCATCAAGGGCTCATAGAAGCTGTTGATGATGAAGAATATGGAGGCAATGAAGGGAGGCAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTTCAGTGTGGAGATGGAAGGTACCTTGCTTCTTCATCAAGCACATCTAGATCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGACCAATTATTTTAG 2046 44.53 MAAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANSTGELGVSSNLTNICLQSISQTMELYGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTKVGENCRLLLSEESACRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDAASVIDLASCFFGVQGLNRPPAPPPSLATPDISPSPSAAASPGPLALGVSDGKRHRHHSYHVTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSEKTDANSSRSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFNEDLVLAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPINTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLAYMISDSRISELVDSSIKSSFNLDQLHTVVSIVRWCTEGEGRTRPSIKQVLRLLYESSDPMHQGLIEAVDDEEYGGNEGRQSMSKRKMHKSDVIFQCGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1676594 1681323 + CmaCh16G003540.1 Cma16g00354 310952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00354 681 SUPERFAMILY Protein kinase-like (PK-like) 309 597 IPR011009 -
Cma16g00354 681 Gene3D Transferase(Phosphotransferase) domain 1 404 615 - -
Cma16g00354 681 Pfam Protein kinase domain 332 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00354 681 PANTHER OS01G0750732 PROTEIN 9 676 - -
Cma16g00354 681 Pfam SPARK 29 161 IPR043891 -
Cma16g00354 681 PANTHER BNAC06G02630D PROTEIN 9 676 - -
Cma16g00354 681 ProSiteProfiles Protein kinase domain profile. 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00354 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cma16g00354 681 MobiDBLite consensus disorder prediction 214 243 - -
Cma16g00354 681 CDD STKc_IRAK 334 596 - -
Cma16g00354 681 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00354 681 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Cma16g00354 681 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00354 Cma-Chr16:1676594 Cma03g01452 Cma-Chr3:9096111 1.01E-75 dispersed
Cma16g00819 Cma-Chr16:4551356 Cma16g00354 Cma-Chr16:1676594 2.09E-72 dispersed
Cma16g00354 Cma-Chr16:1676594 Cma04g00487 Cma-Chr4:2482425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69187 PF00069 Pkinase 1.20E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00354 - - csv:101219079 1183.7