Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00355 ATGGATCCAAGAATCTCCTTTTCAAATGATTTTTCTGACACAAAACAGCCATTTAAGCTTGAAAACATGTACAGAGAAGCACCTGTTTCTTCTGATTTTGAGTTCACCGTGAAGAACAGATGTATGATACCAGCAGATGAGATGTTCTTTCAGGGGAAGCTGCTGCCATTGAAGAACAGCTCAAGGAATCTCTTGGTTAAGACAACTTTAAGAGATGAGCTGAAAGTGAATGAAGATTGTAATGATGTTTCATTTCCAAAGCTCACAAACACTTCTGCAAGCTGCTGGAAGCAGAAATTTGGAGATCAAATTAAGAAGATTGGATTTGGAATGACGAGCAGTTTCGCGAATCAAAGAGGGTCCCGATCATGGGCCACCGATGAGGAGTTGCCAGTGTCTAGTGGGGTTCCGATTCCACCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTGGTCATAGCAGAGATTATCTTTCTGGGTCGGCTTGATGTGGCGAAAAATGTAGCCATGGTCGATTCATGGACCGATTTATTCTACCACTCGTCGTCTTCCCGGGCAATGATCGGTGGAGATGATGGTTTACATTCCCGGTTACTCGATGGCGATCGGATCTCGGAATTGAGGACTTGCGAGGAGTGGTTGGAGAAAGAAGACGCTGTAACGTATTCTAGGGACTTCCAAAAGAAGCCGATATTGGTTTCTGGTTTTGATGAGGGGAGGAAATCTTGTGCCGTAGGATGTGAATTTGAGGTCCATCCAAGTAAAGATTGGGATGCTGCTTTTGGTTTAAATCGTCAGAGTGGAAAGCCTTCAATTATTCGATCCATGGAATCATCTCTATATTATCCAGATAACAATATTGCCCAGGCACGACGGAATGGATATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGGTACTTCTCCTGGGCCGAGTATGATATCATGGCACCAGTGCAGGCTAAGACTGAGAATGCCCTTGCAGCTGCTTTCATTTCAAATTGTGATGCTCGTAACTTCCGCTTGGAAGCTCTTGTGGCTCTTGAAAAACTGAACGTCACAATCGATTCATATGGTGCTTGCCACAGAAATCGTGATGGAAGCACAGTGAACAAACTAGAGACTATAAAGCACTACAGGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCCGTTCCAGTGGTTATTGGAGCTCCAAACATTCAAGAGTTTGCTCCTTCACCTGCTTCGCTTTTGCATATCAGGAAGCTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCTGCACATCCTGAGGCATTCAACAACTCATTGAGGTGGAAATATGAGGGTCCATCTGACTCTTTCAAGGCACTATTGGATATGGCAGCAGTTCATTCGTCATGTCGCCTCTGCATTCATTTGGCAACTGGTATTCATGAGACAGAAGAAAAGGGTCTAGCGTTTAAAAATCGACCCTGTAAATGCACCAGAGGTCCGGAGACCGTTTATCACTTATATGTGAGGGAAAGAGGAAGGTTTGATTCAGAGTCCATTTTCTTGAGGTCTAGTAATCTGACGGTTGAAGGGCTGGCGTCAGCAGTGGTTGCGAAGTTCAAATCGCTGAAGCACGAACCGATTTGGAAGCAGGAAAGGCCTAAGAGCTTAAAAGGAGAGGACGAATTAAGGTTGTATAAGATATACCCAGTTGGGTTGACACAGAGGCAAGCTTTATATACCTTCAAATTTCAGGGGGACTCTGATCTCAGAAGACACGTGGAAGATAACCCATGTGCCAAATTTGAAGCCATTTTTGTATAG 1878 43.93 MDPRISFSNDFSDTKQPFKLENMYREAPVSSDFEFTVKNRCMIPADEMFFQGKLLPLKNSSRNLLVKTTLRDELKVNEDCNDVSFPKLTNTSASCWKQKFGDQIKKIGFGMTSSFANQRGSRSWATDEELPVSSGVPIPPKKKWSNAMPLFIALVVIAEIIFLGRLDVAKNVAMVDSWTDLFYHSSSSRAMIGGDDGLHSRLLDGDRISELRTCEEWLEKEDAVTYSRDFQKKPILVSGFDEGRKSCAVGCEFEVHPSKDWDAAFGLNRQSGKPSIIRSMESSLYYPDNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKTENALAAAFISNCDARNFRLEALVALEKLNVTIDSYGACHRNRDGSTVNKLETIKHYRFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIQEFAPSPASLLHIRKLSDVESVANSMKYLAAHPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHLATGIHETEEKGLAFKNRPCKCTRGPETVYHLYVRERGRFDSESIFLRSSNLTVEGLASAVVAKFKSLKHEPIWKQERPKSLKGEDELRLYKIYPVGLTQRQALYTFKFQGDSDLRRHVEDNPCAKFEAIFV 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1681365 1691583 - CmaCh16G003550.1 Cma16g00355 310953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00355 625 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 332 496 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma16g00355 625 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 143 602 - -
Cma16g00355 625 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 220 496 - -
Cma16g00355 625 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 143 602 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma16g00355 625 Gene3D - 278 474 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00355 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101202837 884.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00555 Cma-Chr2:3127057 Cma16g00355 Cma-Chr16:1681365 2.79E-17 dispersed
Cma04g02480 Cma-Chr4:17036885 Cma16g00355 Cma-Chr16:1681365 6.58E-15 dispersed
Cma15g00557 Cma-Chr15:2596576 Cma16g00355 Cma-Chr16:1681365 4.67E-14 dispersed
Cma16g00355 Cma-Chr16:1681365 Cma20g01160 Cma-Chr20:9193551 3.31E-13 dispersed
Cma16g00355 Cma-Chr16:1681365 Cma19g00602 Cma-Chr19:6599899 0 wgd
Cma16g00355 Cma-Chr16:1681365 Cma03g00985 Cma-Chr3:6940561 2.98E-06 wgd
Cma16g00355 Cma-Chr16:1681365 Cma04g00490 Cma-Chr4:2500951 2.62E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00355 Cma_Chr16 FPKM 4.359776 5.373483 4.170182 3.858872 3.432668 3.773187 3.62576 5.298524 4.820026 5.473366