Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00355 ATGGATCCAAGAATCTCCTTTTCAAATGATTTTTCTGACACAAAACAGCCATTTAAGCTTGAAAACATGTACAGAGAAGCACCTGTTTCTTCTGATTTTGAGTTCACCGTGAAGAACAGATGTATGATACCAGCAGATGAGATGTTCTTTCAGGGGAAGCTGCTGCCATTGAAGAACAGCTCAAGGAATCTCTTGGTTAAGACAACTTTAAGAGATGAGCTGAAAGTGAATGAAGATTGTAATGATGTTTCATTTCCAAAGCTCACAAACACTTCTGCAAGCTGCTGGAAGCAGAAATTTGGAGATCAAATTAAGAAGATTGGATTTGGAATGACGAGCAGTTTCGCGAATCAAAGAGGGTCCCGATCATGGGCCACCGATGAGGAGTTGCCAGTGTCTAGTGGGGTTCCGATTCCACCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTGGTCATAGCAGAGATTATCTTTCTGGGTCGGCTTGATGTGGCGAAAAATGTAGCCATGGTCGATTCATGGACCGATTTATTCTACCACTCGTCGTCTTCCCGGGCAATGATCGGTGGAGATGATGGTTTACATTCCCGGTTACTCGATGGCGATCGGATCTCGGAATTGAGGACTTGCGAGGAGTGGTTGGAGAAAGAAGACGCTGTAACGTATTCTAGGGACTTCCAAAAGAAGCCGATATTGGTTTCTGGTTTTGATGAGGGGAGGAAATCTTGTGCCGTAGGATGTGAATTTGAGGTCCATCCAAGTAAAGATTGGGATGCTGCTTTTGGTTTAAATCGTCAGAGTGGAAAGCCTTCAATTATTCGATCCATGGAATCATCTCTATATTATCCAGATAACAATATTGCCCAGGCACGACGGAATGGATATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGGTACTTCTCCTGGGCCGAGTATGATATCATGGCACCAGTGCAGGCTAAGACTGAGAATGCCCTTGCAGCTGCTTTCATTTCAAATTGTGATGCTCGTAACTTCCGCTTGGAAGCTCTTGTGGCTCTTGAAAAACTGAACGTCACAATCGATTCATATGGTGCTTGCCACAGAAATCGTGATGGAAGCACAGTGAACAAACTAGAGACTATAAAGCACTACAGGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCCGTTCCAGTGGTTATTGGAGCTCCAAACATTCAAGAGTTTGCTCCTTCACCTGCTTCGCTTTTGCATATCAGGAAGCTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCTGCACATCCTGAGGCATTCAACAACTCATTGAGGTGGAAATATGAGGGTCCATCTGACTCTTTCAAGGCACTATTGGATATGGCAGCAGTTCATTCGTCATGTCGCCTCTGCATTCATTTGGCAACTGGTATTCATGAGACAGAAGAAAAGGGTCTAGCGTTTAAAAATCGACCCTGTAAATGCACCAGAGGTCCGGAGACCGTTTATCACTTATATGTGAGGGAAAGAGGAAGGTTTGATTCAGAGTCCATTTTCTTGAGGTCTAGTAATCTGACGGTTGAAGGGCTGGCGTCAGCAGTGGTTGCGAAGTTCAAATCGCTGAAGCACGAACCGATTTGGAAGCAGGAAAGGCCTAAGAGCTTAAAAGGAGAGGACGAATTAAGGTTGTATAAGATATACCCAGTTGGGTTGACACAGAGGCAAGCTTTATATACCTTCAAATTTCAGGGGGACTCTGATCTCAGAAGACACGTGGAAGATAACCCATGTGCCAAATTTGAAGCCATTTTTGTATAG 1878 43.93 MDPRISFSNDFSDTKQPFKLENMYREAPVSSDFEFTVKNRCMIPADEMFFQGKLLPLKNSSRNLLVKTTLRDELKVNEDCNDVSFPKLTNTSASCWKQKFGDQIKKIGFGMTSSFANQRGSRSWATDEELPVSSGVPIPPKKKWSNAMPLFIALVVIAEIIFLGRLDVAKNVAMVDSWTDLFYHSSSSRAMIGGDDGLHSRLLDGDRISELRTCEEWLEKEDAVTYSRDFQKKPILVSGFDEGRKSCAVGCEFEVHPSKDWDAAFGLNRQSGKPSIIRSMESSLYYPDNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKTENALAAAFISNCDARNFRLEALVALEKLNVTIDSYGACHRNRDGSTVNKLETIKHYRFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIQEFAPSPASLLHIRKLSDVESVANSMKYLAAHPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHLATGIHETEEKGLAFKNRPCKCTRGPETVYHLYVRERGRFDSESIFLRSSNLTVEGLASAVVAKFKSLKHEPIWKQERPKSLKGEDELRLYKIYPVGLTQRQALYTFKFQGDSDLRRHVEDNPCAKFEAIFV 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1681365 1691583 - CmaCh16G003550.1 Cma16g00355 310953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00355 625 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 332 496 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma16g00355 625 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 143 602 - -
Cma16g00355 625 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 220 496 - -
Cma16g00355 625 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 143 602 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma16g00355 625 Gene3D - 278 474 IPR038577 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00555 Cma-Chr2:3127057 Cma16g00355 Cma-Chr16:1681365 2.79E-17 dispersed
Cma04g02480 Cma-Chr4:17036885 Cma16g00355 Cma-Chr16:1681365 6.58E-15 dispersed
Cma15g00557 Cma-Chr15:2596576 Cma16g00355 Cma-Chr16:1681365 4.67E-14 dispersed
Cma16g00355 Cma-Chr16:1681365 Cma20g01160 Cma-Chr20:9193551 3.31E-13 dispersed
Cma16g00355 Cma-Chr16:1681365 Cma19g00602 Cma-Chr19:6599899 0 wgd
Cma16g00355 Cma-Chr16:1681365 Cma03g00985 Cma-Chr3:6940561 2.98E-06 wgd
Cma16g00355 Cma-Chr16:1681365 Cma04g00490 Cma-Chr4:2500951 2.62E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00355 K00753 - csv:101202837 884.019