Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00365 ATGTCGTTTCGAAGCATTGTTCGTGATGTTAGGGATAGTATTGGGAGCTTATCTAGACGAGGTTTCGAGGCTAGGTTGAGTAGTCATCATAGAGAGAAGTCGAATGCGTCGTCGTTAAATGATGTTCATGATCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCTGAGCTGTTGTATGATGTCGTTCGAAGACTTGAAGAGAGTGAATGTACATGGCCTTCTCGAAAGAACGTCGTGGCCTGCGCTGCGGTGTGTCGTTCTTGGAGAATTATGTGTATGGAGATCGTTAAAGGCCCGGAAGTTTGTGGGAAGCTTACGTTTCCTGTGTCACTGAAGCAGCCCGGACCGCGCGATGGATCTGTACAATGCTTCATTAAGAGGGACAAATCGAACCTAGCATACCATCTCTACTTGTGTCTTAGCCCTGCTCTTCTGGTTGAAAACGGGAAGTTTCTTCTCTCTGCTAAGCGTACACGAAGAACAACTAGCACGGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCGAGTAGCTCGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGAACGAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCACTCCCTCTTCCAGGGAAAACTAGCCGTAGATTCTATTCGAAAAAAGTGTCGCCGAAAGTCCCGACTGGGAGTTACAACATAGCTCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCGATACCAGTGTCTTCCCTCGATGCAGGGGGCGTTGTTCCAGGCCAACCTGAGCTCCTCCCTCCGAAGTCTCTCGACGATTCGTTTCGGAGTGCGTCATTCTCAAAAGCCTTGGATCATTCCATGGAGTTTAGTAGTGCTAGATTCTCCGAAATTGGGCGGGCAGCATTGGATGGCGATGAGGAGGGAAAGATGAGACCTTTGGTACTAAAAAACAAGCCGCCGAGATGGCACGAGCAGCTACAATGTTGGTGCCTGAACTTTCGTGGGCGGGTAACGGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCAGCAATACAACCAGGTGCTGGCGCTCCAACCCCGTCTCAACCAGGGCCACCGGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAAGACATGTTCACGATGGATTATCGATATCCGCTGTCTGCTTTTCAGGCTTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.02 MSFRSIVRDVRDSIGSLSRRGFEARLSSHHREKSNASSLNDVHDQPPVVQNGCWANLPPELLYDVVRRLEESECTWPSRKNVVACAAVCRSWRIMCMEIVKGPEVCGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLAYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPLPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGVVPGQPELLPPKSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPGAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1736649 1739037 - CmaCh16G003650.1 Cma16g00365 310963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00365 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cma16g00365 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cma16g00365 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cma16g00365 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cma16g00365 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cma16g00365 428 PANTHER TUBBY-RELATED 1 428 - -
Cma16g00365 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cma16g00365 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cma16g00365 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cma16g00365 428 Pfam Tub family 115 423 IPR000007 -
Cma16g00365 428 SUPERFAMILY F-box domain 44 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02451 Cma-Chr4:16853307 Cma16g00365 Cma-Chr16:1736649 0 dispersed
Cma06g01463 Cma-Chr6:9347211 Cma16g00365 Cma-Chr16:1736649 3.09E-147 dispersed
Cma15g00596 Cma-Chr15:2826436 Cma16g00365 Cma-Chr16:1736649 0 dispersed
Cma16g00365 Cma-Chr16:1736649 Cma16g00616 Cma-Chr16:3186287 5.48E-162 dispersed
Cma16g00365 Cma-Chr16:1736649 Cma04g00503 Cma-Chr4:2572388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36526 PF01167 Tub 4.80E-116 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00365 K19600 - csv:101216314 848.58