Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00368 ATGGAGATTGATCTCTCACTCAAAATTGATCAAGAACACGAACACGAACAAGAACAAGCTGCTGTCTCGGATTCGAGAAAAGGTTTGGCAGTCGACATTAATGGTGGAGAGATTTCTGCGTTACAAATGGAAATGGATCGAATGAAGGAAGAGAACAAAGCGTTGAGACGAGCTGTGGAACAAACCATGAAAGATTACTATGATCTTGAAACCAAAATTGGTATCATCCAACAAAACAACCTCACCAACAAGGACTCTCGTAGCTTTGTATTATTCCAAGGAAACGAGAAGAAAAGGCATGACATACAAAACCTAGACTTGGATCTCGAGGAAATGTCGAAGAAGAAGAGACGAGCACGGTCGCCGCCATCGAAGGAGGAGGAGACGAAGGAGAGGGAACTAGGGTTATCATTAGGGCTCCATACAAACAACAATGATATGGAAGAAGATAACCATAGGGAATTACAAGAAGAAACAAGAGAGAAGAACAAGCCACAAAGGCCTGAATTATTGCAAGGAATGGCACCTCCACAAAACAGGAAAACTAGGGTTTCTGTGCGAGCTAGATGTGAATCTGCCACTATGAACGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATCGCGAAGGGTAATCCATGCCCTCGAGCGTACTATCGTTGCACAGTTGCCCCGGGATGCCCCGTTAGGAAACAGGTCCAAAGATGCTTAGAAGACATGTCGATTCTGATAACAACGTACGAAGGAACGCATAATCATCCACTCCCTGTCGGAGCCACAGCCATGGCTTCCACAGCTTCAGCAGCAGCTTCCTTCATGCTCTTAGACTCCGCTAATACTAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAAACCCTAATGAGCCCTCTGCCAACCGCTTTTACAGCCCTTTAATGGCTACTTCTTCCACCTCCGATTTGCCCCATTCCTTCTTCCATAGGAACTTTCAACCTAATCATCTTATGGGTTCCCTCCATGGCCGGAGTTGGAACCCTACCGACGGTAATAAGCCACCACTCACGGCGGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTGGCGGCTGCCATTTCGACGCTTATTAACAAAGAGAGCAACCGCACGACGTCGATGCTGGATCCTATCGAACGTTCTTCTTTTGATTCTGGTAAGGACGGCGACGGCGGCGACGATGGTGGCGGCGGAAATAAGAATTGGGTTGTTGAGTCCCTCTCCTTGAATGGGAAGTAA 1269 46.65 MEIDLSLKIDQEHEHEQEQAAVSDSRKGLAVDINGGEISALQMEMDRMKEENKALRRAVEQTMKDYYDLETKIGIIQQNNLTNKDSRSFVLFQGNEKKRHDIQNLDLDLEEMSKKKRRARSPPSKEEETKERELGLSLGLHTNNNDMEEDNHRELQEETREKNKPQRPELLQGMAPPQNRKTRVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSANTNPNILNSSSYSPNPNEPSANRFYSPLMATSSTSDLPHSFFHRNFQPNHLMGSLHGRSWNPTDGNKPPLTAESVSAIASDPKFRVAVAAAISTLINKESNRTTSMLDPIERSSFDSGKDGDGGDDGGGGNKNWVVESLSLNGK 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1747075 1749663 - CmaCh16G003680.1 Cma16g00368 310966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00368 422 MobiDBLite consensus disorder prediction 108 183 - -
Cma16g00368 422 Gene3D WRKY domain 180 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00368 422 ProSiteProfiles WRKY domain profile. 190 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00368 422 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 10 390 - -
Cma16g00368 422 SUPERFAMILY WRKY DNA-binding domain 188 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00368 422 Coils Coil 138 158 - -
Cma16g00368 422 Pfam WRKY DNA -binding domain 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00368 422 MobiDBLite consensus disorder prediction 145 167 - -
Cma16g00368 422 MobiDBLite consensus disorder prediction 108 135 - -
Cma16g00368 422 Coils Coil 95 115 - -
Cma16g00368 422 Coils Coil 38 65 - -
Cma16g00368 422 MobiDBLite consensus disorder prediction 381 422 - -
Cma16g00368 422 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 390 IPR044810 GO:0003700
Cma16g00368 422 SMART WRKY_cls 195 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00368 422 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00368 Cma-Chr16:1747075 Cma19g00912 Cma-Chr19:8235872 2.61E-54 dispersed
Cma16g00368 Cma-Chr16:1747075 Cma04g00508 Cma-Chr4:2585081 3.38E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36527 PF03106 WRKY 1.60E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00368 - - cmo:103496139 474.167