Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00381 ATGATGAGAGTTTTCATTAGTTTTCTCCTCTGTTTACTCTCTGTAACTTGTGCAGCCACTCCAATCACCAACCCCATTTGCCCATTGGACCTTAACTATGTCCTTAGAATCCCATGGACCGCCACCGATTGCCGGAACCCCTTCTTCCAGACCACTGCCAAATCTGCCATGAATGATACCTCCAAATTCCATTGTTGTCAAACCCTCTTGTCCTTGTTTGGAATCGCTTTGGCCCAACACCTCAAACAAACCTCTCATTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCTTGATTACCAGTCCAAACTCTCCTCTCTCTCCCTCCCTGCCAACCTTGTTTCCCATTGCTTTGATCCCTTACAATTTGTGATATCAGCTAATGTCTGCGCTGGTATTCAAACCACTCGAGATTGGGTTTCAAAACTTGGCCAGAACTCGCCTCTTGATTCTGGGTGTCGGTCGAATCTTGTTGGTTCTGGTTGTGATGCTTGTGTGGCTGCTGGTTTCAAAGTTCAAGCTATTTTGACAGGAATTGATGGTAATAAATCTCATTCCATGGATTGCTTTTACTTTGCCGTTCTTTATGCTGCTGCCATTGTGAATGAATCTGGCCCTGAAGGCGACAGTGCTTTAGATTGCATTTTTAATCTTCAATTGAGTACTCAAAAGGGTTCAAAAAGTAAGCATACTTCTCTAGTTTATGGCCTTACTGCTGCTGCTGTAGGACTTTTAGTCGTTTTTGTTCTATTGGGAATAGGATTTTGGTTGTACAAAAGCAAACAATTGGCGAAGAACTCTAGCTTGGAGCTGGATGAACAAGGGTCTAGACCACATGCCAGGCCAAACACTGGATCAATTTGGTTCAAAGTTCATGAGCTTGAGAAGGCAACTGATAACTTTTCTTCAAAGAATTTCATTGGCAGAGGTGGGTTTGGTTTAGTTTACAAAGGGAGATTACCTGATGGAAGCATGGTGGCTGTAAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCAGAGTTCTGCAATGAAGTTGAAATTATCAGTAATCTAAAGCACAGGAATCTTGTTCCACTTAGGGGCTGCTGCGTGGTTGATGAGGGTTTTGATGAGAGTTCAAGTGAGAGATACCTTGTTTATGATTACATGCCAAATGGAAATCTTGATGATTATTTGTTCCCTATACCATCTGATCAAGATGGAACTGTGAAGAACTCATTGACATGGCCTCAAAGGAAGAACATTATCTTGGATGTGGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAGCCTGCAATATATCACAGAGATATCAAGGCGACAAACATATTGTTAGATGCAGATATGAGAGCGAAAGTTGCAGATTTCGGGCTTGCCAAACAGAGTAGGGAAGGACAGTCGCATCTAACGACTCGAGTTGCAGGAACTCATGGGTATTTAGCTCCTGAATACGCGCTTTATGGACAACTAACTGAGAAGAGCGATGTTTATAGCTTTGGAGTGGTGGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTTTCTTTGGCATCGTCGCCACGTGCGTTCTTGATAACGGATTGGGCTTGGTCATTGGTGAAAGGTGGAAAGATAGGGGAAACTTTAGATCCTTGTCTTGTGAAAGATGGAGATTGTTCTAATTCAAATCCAAAAGGCATAATGGAGAGGTTTGTTGCGGTTGGAATTTTGTGTTCTCATGTGATGGTGGCTTTGAGGCCTACCATTATGGATGCTCTGAAGATGTTGGAAGGTGACAGTGAAGTTCCTCAAATTTCTGATCGGCCAGTGCCTTATGGGCATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGCATATCACGACATTAA 1884 42.83 MMRVFISFLLCLLSVTCAATPITNPICPLDLNYVLRIPWTATDCRNPFFQTTAKSAMNDTSKFHCCQTLLSLFGIALAQHLKQTSHFNLPDLATSNSCLLDYQSKLSSLSLPANLVSHCFDPLQFVISANVCAGIQTTRDWVSKLGQNSPLDSGCRSNLVGSGCDACVAAGFKVQAILTGIDGNKSHSMDCFYFAVLYAAAIVNESGPEGDSALDCIFNLQLSTQKGSKSKHTSLVYGLTAAAVGLLVVFVLLGIGFWLYKSKQLAKNSSLELDEQGSRPHARPNTGSIWFKVHELEKATDNFSSKNFIGRGGFGLVYKGRLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVVDEGFDESSSERYLVYDYMPNGNLDDYLFPIPSDQDGTVKNSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRAKVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLASSPRAFLITDWAWSLVKGGKIGETLDPCLVKDGDCSNSNPKGIMERFVAVGILCSHVMVALRPTIMDALKMLEGDSEVPQISDRPVPYGHPSFVGDGSNFSISRH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1820625 1822508 + CmaCh16G003810.1 Cma16g00381 310979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00381 627 SMART serkin_6 303 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00381 627 ProSiteProfiles Protein kinase domain profile. 303 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00381 627 CDD STKc_IRAK 309 596 - -
Cma16g00381 627 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 12 625 - -
Cma16g00381 627 SUPERFAMILY Protein kinase-like (PK-like) 282 595 IPR011009 -
Cma16g00381 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 625 - -
Cma16g00381 627 Pfam Protein kinase domain 305 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00381 627 Pfam SPARK 24 192 IPR043891 -
Cma16g00381 627 Gene3D Phosphorylase Kinase; domain 1 265 385 - -
Cma16g00381 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cma16g00381 627 ProSitePatterns Protein kinases ATP-binding region signature. 309 332 IPR017441 GO:0005524
Cma16g00381 627 Gene3D Transferase(Phosphotransferase) domain 1 386 605 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00381 Cma-Chr16:1820625 Cma14g00663 Cma-Chr14:3324305 2.81E-78 dispersed
Cma16g00381 Cma-Chr16:1820625 Cma04g00526 Cma-Chr4:2664874 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69188 PF00069 Pkinase 1.10E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00381 - - bhj:120088261 1100.89