Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00383 ATGCAGATTCACTTCCTCCACCGCCCCGACACCGCCGAGAAAGACGCCGATGAGGACAAGAAGGAAGATCAGAATCACAGAAGCGACGACGATAACGATAGCGATAGCGATTTACCATCGTCGTTGAGCCTTAGAGAGCTTTCGAAGGTTATACTTCCACCTTTGGGAGTATCGAGCTTTACTGATGACAATCAAGTGAAGCATCATAAATGGATCATCTCTCCCATGAGCTCAAAATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTATTCTGTGTGGGTTTACCCAATGGAAGTGGCGTTTGTGGACGCAATTCCCAAGCGCCGATTGTTAATTGTAGACAATGTTGTCGATCTCTTCTTCGCCATTGACATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTCGTTCGCGATTCTAAGAAGATAGCTATTAGGTACCTTTCGACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAATCACTGGCCTATCTGTCCACAGGCAAATATGATATTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTCTGGCGACTGCGACGTGTCAAGCAACTTTTTACAAGGCTCGAGAAGGACATTAGATTCAGCTACTTTTGGATTCGATGTGCTAGGCTTCTATTTGTTACTTTGCTCTATGTCCATTGTGCCGCATGCCTCTACTACATGTTGGCTGACCGGTATCCACATGAAGGAAAGACATGGATTGGAACAGCGTTTCCAAATTTCAAAGAGACTAGCTTTGGAGTGAGATATGTTTCATCCATGTATTGGTCTATCACCACTATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCATGGAGATGATCTTTATAATTTTCTACATGCTCTTCAATCTCGGGTTAACCGCTTACTTGATCGGTAACATGACAAACCTAGTCGTTGAAGGAACTCGACGCACAATGGAATTCAGAAACAGCATCGAACTGGCATCGAATTTTGTTAACCGAAACCGCCTGCCTTCGAAGTTGAAGGAACACATATTAGCATACATGTGTTTAAGATTCAAAGCCGAGAGCCTAAACCAACAACAACTGATCGAACAGCTTCCGAAGTCGATTTGCCATAGCATCTGTCAGCAATTGTTTATGCCGACCGTGGAGAAACTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGTGATGCTGGTAGCCGAGATGAAAGCCGAGTATATACCGCCTAAAGAGGACGTGATAGTACATAACGAAAGCCCGGAAGAAGTTTATATCATCGTGTCAGGGGAAATCGAAATTATCGACTGTGAGACGGAGGTGGAACGGATTGTCGGAACATTACACAGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAGCTTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAAGCTCAAAACAAGTGTGCTACAAGAAGCTATGCATATCAAACAAGAAGACAGTATAGTCATCGTCAAGAACTTCCTTCAGGAAAGGGAGCTGAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGACGACACCGACTTTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAGTTAGATTTTAGTAGAGTTAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAGCTCAAAAGAGTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGATCTGAAATTGATTCCATTGATGTGATAAGGGATAATGATAAGCTTTTTTTCTCATAG 1899 43.23 MQIHFLHRPDTAEKDADEDKKEDQNHRSDDDNDSDSDLPSSLSLRELSKVILPPLGVSSFTDDNQVKHHKWIISPMSSKYRWWQSFMVVLVAYSVWVYPMEVAFVDAIPKRRLLIVDNVVDLFFAIDIFFTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFESLAYLSTGKYDICLPFALLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLFVTLLYVHCAACLYYMLADRYPHEGKTWIGTAFPNFKETSFGVRYVSSMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIELASNFVNRNRLPSKLKEHILAYMCLRFKAESLNQQQLIEQLPKSICHSICQQLFMPTVEKLYLFKGVSKETLVMLVAEMKAEYIPPKEDVIVHNESPEEVYIIVSGEIEIIDCETEVERIVGTLHSGSMFGEVGALCCKNQSFTYRTKTLSQLLKLKTSVLQEAMHIKQEDSIVIVKNFLQERELSHKITIEGSPEKETTPTLIEEKDQSFNWKHSIELDFSRVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKRVAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1848720 1854152 + CmaCh16G003830.1 Cma16g00383 310981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00383 632 MobiDBLite consensus disorder prediction 1 40 - -
Cma16g00383 632 Pfam Ion transport protein 80 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma16g00383 632 ProSiteProfiles KHA domain profile. 560 632 IPR021789 -
Cma16g00383 632 SMART cnmp_10 400 517 IPR000595 -
Cma16g00383 632 SUPERFAMILY Voltage-gated potassium channels 75 323 - -
Cma16g00383 632 Pfam KHA, dimerisation domain of potassium ion channel 560 631 IPR021789 -
Cma16g00383 632 PANTHER POTASSIUM CHANNEL AKT2/3 46 527 - -
Cma16g00383 632 PANTHER POTASSIUM CHANNEL AKT2/3 555 631 - -
Cma16g00383 632 SUPERFAMILY cAMP-binding domain-like 327 516 IPR018490 -
Cma16g00383 632 Gene3D - 81 323 - -
Cma16g00383 632 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma16g00383 632 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma16g00383 632 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma16g00383 632 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma16g00383 632 PANTHER POTASSIUM CHANNEL AKT1 555 631 IPR045319 GO:0005249|GO:0006813
Cma16g00383 632 PANTHER POTASSIUM CHANNEL AKT1 46 527 IPR045319 GO:0005249|GO:0006813
Cma16g00383 632 Pfam Cyclic nucleotide-binding domain 423 502 IPR000595 -
Cma16g00383 632 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Cma16g00383 632 Gene3D Jelly Rolls 367 537 IPR014710 -
Cma16g00383 632 MobiDBLite consensus disorder prediction 7 34 - -
Cma16g00383 632 CDD CAP_ED 400 503 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00555 Cma-Chr13:5665470 Cma16g00383 Cma-Chr16:1848720 1.33E-170 dispersed
Cma16g00383 Cma-Chr16:1848720 Cma18g00463 Cma-Chr18:2560657 4.59E-173 dispersed
Cma16g00383 Cma-Chr16:1848720 Cma04g00529 Cma-Chr4:2693113 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00383 K21867 - csv:101205212 1085.86