Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00387 ATGGCTTCTCGTTTCTGGACACAGGGTGGTGGCAGTGGTTCTGACTCTGAAGCGGAGGAGAGTGACTATGATGAAGAGAATGACGATATTCAGGTTGATCTTGGGTCTCAACAGAACAGAAGCAGATATTTGCAAGGGAATGCCAGTGACAGTGAGGATTCTGAGGACAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCCACTGTCGATCAAATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCCTACAGGAGAATTTTGATAAGATCAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAAGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTTCTAAATCAAGCCATGGCCAATAAGGAAGCTAAGAAAAAAATGAGTACTAGCAATGCTAAGGCCTTGAACTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTACCAAGTATAGGGAAAATCCTGAGGTTGAAGAAGAAGAAAAGGACGATGAGTTGGAGACAGAGGAGGAGGAAGATTCTGATTCTGAAATTGAGGATCCTTCTAAAATCATGTCAGGTACAGAAGATGAAGAGGATGAGGAAGAAGGCCCAGATGATGATCCAACGGGTCCCTGGCAGAAGAAGTTGAGCAAAAAAGATAAGCTCATGGATAAGCAATTTATGAAGGATCCTAGTGAGATCACATGGGACACCGTGAACAAGAAATTTAAGGAAGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAACATGCTTTCTATAGTTGATATTCTTGTGCAGAATTCTAACATTGTTGTGGATGATATGGTCGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTACAAGGGAACTATTCGTGTTTGGGGTAACCTGGTTGCTTTTGTTGAGAAGATTGAAACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTCATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCCAAAGTTGCCCTGAGGCGTGTTGAGCAGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAACTGTCTGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTAGAAGAGAGTAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGGTTGTACCTCGTAAACCCACCTTTCCCGAGAGTAGTAGGGCTTTTATGGACATTCTGGTGACCCTCATATACCAATACGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGCGATATTTATCAGCATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTATTACTGATGAGTCACTTACAGGATAGTATCCAACACTTGGACATTTCAACACAGATCCTTTTCAACAGGGCAATGGCTCAACTTGGTTTATGTGGATTTCGGGTAGGCCTGATTAATGAAGGACATGGCTGCCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCGCAAAGCCGATATCATGAAAAGACTCCAGAACAGGAAAGACTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCACGATGCAAAGCGCAAGGTTATTAGTAAGAACTTTAGACGCTTACTTGAGGTGAGTGAGCGACAAACTTTTACTGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCAACCCGTGCCCTTCGTAAGGGCGACTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAACTACTTAGGAATCGCGAAGAAGTTCTTGAAATGGTTAAGGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACGTACTCTTCGTCTTATGATTCTCTGAGTTCAGAACAACTCACCCGAATGTTCGACCTTGCAGAGGGTCAAACACACAGTATTGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGCGTCATCTTCCACGACGTTACACACACCCGATTACAGGGCCTGGCATTCCAATTGGCAGATAAGTTGTCAATCCTTGCTGAAACCAATGAGAGGGCAGTTGAGGCAAGAATAGGTGGAGGATTAGATTTGCCCATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGAGCAGCAGGTGGGAATAACAGGTGGCCAGATAACATGTCTTATAATCAAGGAAGGCAAGGTGGTATTAGTTCGCGTGCAGGATATGGAGGTCGAGGCCAAGGTGGGGGCGGCGGATATTCTAGAGACCGGACGGGTCAGTCCCGAGGAGGAAACGCTGGATACCAAAGCACCCGTTATCAAGATGCTGCTGCGTATGGATCGGGGAGGACTGCTTATCAGTCTGGGTCGGTCCGAGGATCCCAGATGGATACTTCAGCTCGGATGGTCAGTCTGAACAAAGGGGTTCATGCTTAA 2817 44.76 MASRFWTQGGGSGSDSEAEESDYDEENDDIQVDLGSQQNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQENFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEEVITKYRENPEVEEEEKDDELETEEEEDSDSEIEDPSKIMSGTEDEEDEEEGPDDDPTGPWQKKLSKKDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVQNMLSIVDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVEKIETEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERVGDYKAASKVALRRVEQIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPEVVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNREEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSEQLTRMFDLAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAETNERAVEARIGGGLDLPMRRRDNQEYAAGGAAGGNNRWPDNMSYNQGRQGGISSRAGYGGRGQGGGGGYSRDRTGQSRGGNAGYQSTRYQDAAAYGSGRTAYQSGSVRGSQMDTSARMVSLNKGVHA 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1891498 1895837 + CmaCh16G003870.1 Cma16g00387 310985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00387 938 MobiDBLite consensus disorder prediction 849 863 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 32 48 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 206 220 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 17 31 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 1 15 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 911 929 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 139 157 - -
Cma16g00387 938 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 937 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 178 198 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 1 75 - -
Cma16g00387 938 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Cma16g00387 938 MobiDBLite consensus disorder prediction 139 234 - -
Cma16g00387 938 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 937 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma16g00387 938 Coils Coil 147 174 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 49 74 - -
Cma16g00387 938 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 838 896 - -
Cma16g00387 938 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 862 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma16g00387 938 SMART PINT_4 721 809 IPR000717 -
Cma16g00387 938 MobiDBLite consensus disorder prediction 158 177 - -
Cma16g00387 938 MobiDBLite consensus disorder prediction 911 938 - -
Cma16g00387 938 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma16g00387 938 Pfam PCI domain 660 788 IPR000717 -
Cma16g00387 938 SUPERFAMILY Winged helix DNA-binding domain 721 791 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00387 Cma-Chr16:1891498 Cma04g00538 Cma-Chr4:2736291 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00387 K03252 - csv:101203990 1597.79