Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00389 | ATGGGCAAAATACCATGTTCTTTTTGCCGGAGCAGTAGTCGTCGCCGCCGTAAGAAGGCGGCTCAGTCATCACTGTCCCCATTGCCTCAGCCACCTCCGCAGACTGGCATCTGCTCTCCTCCCATTAACAATAATGGCAGCGGCTTGGTCGGTGGTGGTGGTGGTGGGGCCATGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTTGACAGGTGGGGGCAGACGGAGCTTATAGAGTGGGACAAGAGCGCCATAATCCGGCGTGCTGCAATTCCGGCCAGGGATTTGAGGATTCTTGGTCCTATTTTCTCACAATCCTCCAACATACTCGCCAGGGAAAAGGCCATGGTCGTTAGTTTAGAATTCATAAAAGCTATAGTTACTGCTGAAGAAGTTCTACTACTTGACCCTCTTTGCCAAGAGGTTATTCCATTTGTGGATAAGCTAAGGAAGCTACTTGCTAAGATGAGTTCATCTCAAGTTGAAAATGATGTTAATGTTTCGAGAGGAGGAAAGCAGTTGCCAGTTTCCGAAGCTGTTGATGAGCAGTATGAGCTGCCGTTCGAGTTTCAAGTTCTTGAAATTGCGTTGGAGGTTGTTTGCATATACTTAGATTCCACCGTGAAAGACCTTGAGAGAGATGCTTATCCTGTCCTGGACGAACTGGCTATGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGGACAACTATATTTGACAAGAAAATGGATGCAGAATCAGCAGTCCGATGCTTCGCTGGGAGTAGTCGCTTCCAACAGCACCACTGCCACCGTTCCTCATCTGCGTCGACTTAGTTCCACCAGGAGCGGAAGTGCAGTAACCAGCAATCTTTCGGATGACAATGACGTAGAGGATCTGGAAATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATATATCGACGACACCGAGGATTACGTCAACATTCAACTTGACAGTCAAAGAAACGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTCGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTATATTGTACGAGACGAACGGGATATTCGAGTACTTTGTTGGAGGTGCTTCAGCAGGGTGTTTGTTGATTTTCCTGCTAATTTTTGGGTATGCAAGATGGAAGAAGCTTCTTGTCATCACAGAATGCCATAAGCTGATAGCCCATTTGAGAAAAGGTAAAATTTCTGAGAACATTTTCGCTTTGAATTCGTTCCCTGTTCGCGTTACGCTTCGAAGATCTTCGTTCTTCAATCGCCACAGAGTAACACTTGGTGGCATAGTTAGTTCATTGTTTCAGCGAATTGATTTGCGTTCGAGCGAGCAGCATAAACGTGAAAAGGAGTTTCTCGTATTTCTTTATATGGAGAATTCTAAAGGGTCATCCAACGTCAGAAATTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCCAAAAGTCCCTTTCCGAGCGTTTCTCCATCATATACTGAATTTGTTCCTAACACTGTTATCGGTGCAAAAGCTGTTCAGAGACCACGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGCATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCCAATGTTAATTTTGATAGTATCACGCAAGAAGATTTCAAATATGCAAATGCAATTCCTGGACACTCATGGTTATCTCAAGAATTTGATCATCAAAGGGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATGTAACAAAACAGAAGAATAGGGTGTGGGAATCATCTTTATCTACCATGAATAATCCTATTGCTCTTCATTCTCCCAGGGAGAACATTGTTATTCATACCTCAGCACCATTAAGCGCTCCGCAAGAAGCAGATGGTTTGCCTTCTACAGCTAGTGAAAAACAGGATCTAGTTGAGTCTGGTTCACACAATCCAAAAGTCTCTTCTGAAAGGAAAGATGCTTCTCATGGAAAATCATCTGCGTCTGATACAGAAAATAAACGCGCCAAACAACAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCTGAGCTTGAAAGGAAAGTACAAGCTCTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAGCAGCATCTTATTCTTAGCATGGAAAACAATGCTCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAGCTATGCACCAGCAGCAACATCAGCAGCAACATCAGCAGCAGCAACAACCTCAACCACTACGACCCTCTTCTAGTCATCGACGTAGTTCGAGCAAAGACCTCGACAATCAATTTGCCAATCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAACGCTGCTGCTGCTGATCTCTTCCAGTGTTGGTACCTGTCTGTGTCCCTGCTCTCTGCCTTTTAATTCTTTGCCGCTGTTTCCTGGCTTTTCTGGAGTTAACATCTTCATATGTATGCATGCACCTGGTGGTCATTGCCGTTGTTTTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTGGTATCTGTATGTACTGTATTATGTCGTCTAATCAATTATAA | 2910 | 44.71 | MGKIPCSFCRSSSRRRRKKAAQSSLSPLPQPPPQTGICSPPINNNGSGLVGGGGGGAMGKVKKKAGGARLWMRLDRWGQTELIEWDKSAIIRRAAIPARDLRILGPIFSQSSNILAREKAMVVSLEFIKAIVTAEEVLLLDPLCQEVIPFVDKLRKLLAKMSSSQVENDVNVSRGGKQLPVSEAVDEQYELPFEFQVLEIALEVVCIYLDSTVKDLERDAYPVLDELAMNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMGQLYLTRKWMQNQQSDASLGVVASNSTTATVPHLRRLSSTRSGSAVTSNLSDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDSQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCILYETNGIFEYFVGGASAGCLLIFLLIFGYARWKKLLVITECHKLIAHLRKGKISENIFALNSFPVRVTLRRSSFFNRHRVTLGGIVSSLFQRIDLRSSEQHKREKEFLVFLYMENSKGSSNVRNFMSSGKHALLPPKSPFPSVSPSYTEFVPNTVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSITQEDFKYANAIPGHSWLSQEFDHQRDARHASFYTEANVTKQKNRVWESSLSTMNNPIALHSPRENIVIHTSAPLSAPQEADGLPSTASEKQDLVESGSHNPKVSSERKDASHGKSSASDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQHLILSMENNALKQRLENLAQEQLIKYLEQEVLEREIGRLRAMHQQQHQQQHQQQQQPQPLRPSSSHRRSSSKDLDNQFANLSLKQKDSGSSRDPVTGPTLLLLISSSVGTCLCPCSLPFNSLPLFPGFSGVNIFICMHAPGGHCRCFVCSTWVVWPTGGGGICMYCIMSSNQL | 969 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1901032 | 1910703 | + | CmaCh16G003890.1 | Cma16g00389 | 310987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00389 | 969 | CDD | Mrs2_Mfm1p-like | 71 | 438 | IPR039204 | - | |
Cma16g00389 | 969 | Coils | Coil | 762 | 817 | - | - | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 729 | 756 | - | - | |
Cma16g00389 | 969 | Gene3D | - | 749 | 803 | - | - | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 709 | 728 | - | - | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 838 | 861 | - | - | |
Cma16g00389 | 969 | Gene3D | Magnesium transport protein CorA, transmembrane region | 149 | 372 | - | - | |
Cma16g00389 | 969 | Gene3D | - | 58 | 142 | - | - | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cma16g00389 | 969 | SMART | brlzneu | 747 | 806 | IPR004827 | GO:0003700|GO:0006355 | |
Cma16g00389 | 969 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 377 | 430 | IPR045863 | - | |
Cma16g00389 | 969 | PANTHER | MAGNESIUM TRANSPORTER MRS2-4-RELATED | 5 | 439 | - | - | |
Cma16g00389 | 969 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 5 | 439 | IPR039204 | - | |
Cma16g00389 | 969 | Coils | Coil | 239 | 266 | - | - | |
Cma16g00389 | 969 | Pfam | CorA-like Mg2+ transporter protein | 243 | 432 | IPR002523 | GO:0016020|GO:0030001|GO:0046873|GO:0055085 | |
Cma16g00389 | 969 | CDD | bZIP_plant_RF2 | 751 | 797 | IPR044759 | GO:0003700|GO:0006355 | |
Cma16g00389 | 969 | SUPERFAMILY | Leucine zipper domain | 758 | 800 | IPR046347 | GO:0003700|GO:0006355 | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 837 | 868 | - | - | |
Cma16g00389 | 969 | MobiDBLite | consensus disorder prediction | 702 | 760 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01804 | Cma-Chr11:12068222 | Cma16g00389 | Cma-Chr16:1901032 | 6.92E-28 | dispersed | |
Cma16g00389 | Cma-Chr16:1901032 | Cma17g00187 | Cma-Chr17:979088 | 1.77E-97 | dispersed | |
Cma18g00961 | Cma-Chr18:8167945 | Cma16g00389 | Cma-Chr16:1901032 | 1.75E-19 | dispersed | |
Cma19g00903 | Cma-Chr19:8200732 | Cma16g00389 | Cma-Chr16:1901032 | 9.93E-27 | dispersed | |
Cma20g00588 | Cma-Chr20:2783690 | Cma16g00389 | Cma-Chr16:1901032 | 2.86E-20 | dispersed | |
Cma04g00542 | Cma-Chr4:2753814 | Cma16g00389 | Cma-Chr16:1901032 | 0 | transposed | |
Cma04g01854 | Cma-Chr4:9401035 | Cma16g00389 | Cma-Chr16:1901032 | 1.35E-132 | transposed | |
Cma16g00389 | Cma-Chr16:1901032 | Cma04g00540 | Cma-Chr4:2745971 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00389 | K16075 | - | csv:101203496 | 671.003 |