Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00389 ATGGGCAAAATACCATGTTCTTTTTGCCGGAGCAGTAGTCGTCGCCGCCGTAAGAAGGCGGCTCAGTCATCACTGTCCCCATTGCCTCAGCCACCTCCGCAGACTGGCATCTGCTCTCCTCCCATTAACAATAATGGCAGCGGCTTGGTCGGTGGTGGTGGTGGTGGGGCCATGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTTGACAGGTGGGGGCAGACGGAGCTTATAGAGTGGGACAAGAGCGCCATAATCCGGCGTGCTGCAATTCCGGCCAGGGATTTGAGGATTCTTGGTCCTATTTTCTCACAATCCTCCAACATACTCGCCAGGGAAAAGGCCATGGTCGTTAGTTTAGAATTCATAAAAGCTATAGTTACTGCTGAAGAAGTTCTACTACTTGACCCTCTTTGCCAAGAGGTTATTCCATTTGTGGATAAGCTAAGGAAGCTACTTGCTAAGATGAGTTCATCTCAAGTTGAAAATGATGTTAATGTTTCGAGAGGAGGAAAGCAGTTGCCAGTTTCCGAAGCTGTTGATGAGCAGTATGAGCTGCCGTTCGAGTTTCAAGTTCTTGAAATTGCGTTGGAGGTTGTTTGCATATACTTAGATTCCACCGTGAAAGACCTTGAGAGAGATGCTTATCCTGTCCTGGACGAACTGGCTATGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGGACAACTATATTTGACAAGAAAATGGATGCAGAATCAGCAGTCCGATGCTTCGCTGGGAGTAGTCGCTTCCAACAGCACCACTGCCACCGTTCCTCATCTGCGTCGACTTAGTTCCACCAGGAGCGGAAGTGCAGTAACCAGCAATCTTTCGGATGACAATGACGTAGAGGATCTGGAAATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATATATCGACGACACCGAGGATTACGTCAACATTCAACTTGACAGTCAAAGAAACGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTCGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTATATTGTACGAGACGAACGGGATATTCGAGTACTTTGTTGGAGGTGCTTCAGCAGGGTGTTTGTTGATTTTCCTGCTAATTTTTGGGTATGCAAGATGGAAGAAGCTTCTTGTCATCACAGAATGCCATAAGCTGATAGCCCATTTGAGAAAAGGTAAAATTTCTGAGAACATTTTCGCTTTGAATTCGTTCCCTGTTCGCGTTACGCTTCGAAGATCTTCGTTCTTCAATCGCCACAGAGTAACACTTGGTGGCATAGTTAGTTCATTGTTTCAGCGAATTGATTTGCGTTCGAGCGAGCAGCATAAACGTGAAAAGGAGTTTCTCGTATTTCTTTATATGGAGAATTCTAAAGGGTCATCCAACGTCAGAAATTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCCAAAAGTCCCTTTCCGAGCGTTTCTCCATCATATACTGAATTTGTTCCTAACACTGTTATCGGTGCAAAAGCTGTTCAGAGACCACGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGCATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCCAATGTTAATTTTGATAGTATCACGCAAGAAGATTTCAAATATGCAAATGCAATTCCTGGACACTCATGGTTATCTCAAGAATTTGATCATCAAAGGGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATGTAACAAAACAGAAGAATAGGGTGTGGGAATCATCTTTATCTACCATGAATAATCCTATTGCTCTTCATTCTCCCAGGGAGAACATTGTTATTCATACCTCAGCACCATTAAGCGCTCCGCAAGAAGCAGATGGTTTGCCTTCTACAGCTAGTGAAAAACAGGATCTAGTTGAGTCTGGTTCACACAATCCAAAAGTCTCTTCTGAAAGGAAAGATGCTTCTCATGGAAAATCATCTGCGTCTGATACAGAAAATAAACGCGCCAAACAACAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCTGAGCTTGAAAGGAAAGTACAAGCTCTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAGCAGCATCTTATTCTTAGCATGGAAAACAATGCTCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAGCTATGCACCAGCAGCAACATCAGCAGCAACATCAGCAGCAGCAACAACCTCAACCACTACGACCCTCTTCTAGTCATCGACGTAGTTCGAGCAAAGACCTCGACAATCAATTTGCCAATCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAACGCTGCTGCTGCTGATCTCTTCCAGTGTTGGTACCTGTCTGTGTCCCTGCTCTCTGCCTTTTAATTCTTTGCCGCTGTTTCCTGGCTTTTCTGGAGTTAACATCTTCATATGTATGCATGCACCTGGTGGTCATTGCCGTTGTTTTGTTTGTTCTACATGGGTTGTGTGGCCTACCGGAGGTGGTGGTATCTGTATGTACTGTATTATGTCGTCTAATCAATTATAA 2910 44.71 MGKIPCSFCRSSSRRRRKKAAQSSLSPLPQPPPQTGICSPPINNNGSGLVGGGGGGAMGKVKKKAGGARLWMRLDRWGQTELIEWDKSAIIRRAAIPARDLRILGPIFSQSSNILAREKAMVVSLEFIKAIVTAEEVLLLDPLCQEVIPFVDKLRKLLAKMSSSQVENDVNVSRGGKQLPVSEAVDEQYELPFEFQVLEIALEVVCIYLDSTVKDLERDAYPVLDELAMNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMGQLYLTRKWMQNQQSDASLGVVASNSTTATVPHLRRLSSTRSGSAVTSNLSDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDSQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCILYETNGIFEYFVGGASAGCLLIFLLIFGYARWKKLLVITECHKLIAHLRKGKISENIFALNSFPVRVTLRRSSFFNRHRVTLGGIVSSLFQRIDLRSSEQHKREKEFLVFLYMENSKGSSNVRNFMSSGKHALLPPKSPFPSVSPSYTEFVPNTVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSITQEDFKYANAIPGHSWLSQEFDHQRDARHASFYTEANVTKQKNRVWESSLSTMNNPIALHSPRENIVIHTSAPLSAPQEADGLPSTASEKQDLVESGSHNPKVSSERKDASHGKSSASDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQHLILSMENNALKQRLENLAQEQLIKYLEQEVLEREIGRLRAMHQQQHQQQHQQQQQPQPLRPSSSHRRSSSKDLDNQFANLSLKQKDSGSSRDPVTGPTLLLLISSSVGTCLCPCSLPFNSLPLFPGFSGVNIFICMHAPGGHCRCFVCSTWVVWPTGGGGICMYCIMSSNQL 969
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 1901032 1910703 + CmaCh16G003890.1 Cma16g00389 310987
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00389 969 CDD Mrs2_Mfm1p-like 71 438 IPR039204 -
Cma16g00389 969 Coils Coil 762 817 - -
Cma16g00389 969 MobiDBLite consensus disorder prediction 729 756 - -
Cma16g00389 969 Gene3D - 749 803 - -
Cma16g00389 969 MobiDBLite consensus disorder prediction 709 728 - -
Cma16g00389 969 MobiDBLite consensus disorder prediction 838 861 - -
Cma16g00389 969 Gene3D Magnesium transport protein CorA, transmembrane region 149 372 - -
Cma16g00389 969 Gene3D - 58 142 - -
Cma16g00389 969 MobiDBLite consensus disorder prediction 1 45 - -
Cma16g00389 969 SMART brlzneu 747 806 IPR004827 GO:0003700|GO:0006355
Cma16g00389 969 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 377 430 IPR045863 -
Cma16g00389 969 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 439 - -
Cma16g00389 969 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 439 IPR039204 -
Cma16g00389 969 Coils Coil 239 266 - -
Cma16g00389 969 Pfam CorA-like Mg2+ transporter protein 243 432 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma16g00389 969 CDD bZIP_plant_RF2 751 797 IPR044759 GO:0003700|GO:0006355
Cma16g00389 969 SUPERFAMILY Leucine zipper domain 758 800 IPR046347 GO:0003700|GO:0006355
Cma16g00389 969 MobiDBLite consensus disorder prediction 837 868 - -
Cma16g00389 969 MobiDBLite consensus disorder prediction 702 760 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01804 Cma-Chr11:12068222 Cma16g00389 Cma-Chr16:1901032 6.92E-28 dispersed
Cma16g00389 Cma-Chr16:1901032 Cma17g00187 Cma-Chr17:979088 1.77E-97 dispersed
Cma18g00961 Cma-Chr18:8167945 Cma16g00389 Cma-Chr16:1901032 1.75E-19 dispersed
Cma19g00903 Cma-Chr19:8200732 Cma16g00389 Cma-Chr16:1901032 9.93E-27 dispersed
Cma20g00588 Cma-Chr20:2783690 Cma16g00389 Cma-Chr16:1901032 2.86E-20 dispersed
Cma04g00542 Cma-Chr4:2753814 Cma16g00389 Cma-Chr16:1901032 0 transposed
Cma04g01854 Cma-Chr4:9401035 Cma16g00389 Cma-Chr16:1901032 1.35E-132 transposed
Cma16g00389 Cma-Chr16:1901032 Cma04g00540 Cma-Chr4:2745971 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00389 K16075 - csv:101203496 671.003