Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00396 ATGTCTCAATGGGCACTTCGCGGCCACTCTCTCTCTCTTACTGAAAGCTGCAGAGAGGCAATTATGATAATTTCTGTAGAGATTTTTCTATACGTTGCGAGTGCCGTTCCGGAATGTATTAAGCTTATTGCGTATGCTTTTAGTCTGAATTTTGGTAGGATTTGGCAAGATTTTGGGGGTTTAGTTCCTGAGTTTTTGTTGAGTTTTCGCGTTATGGGAATGTTAGAAGAGGAGGATATATTAGTATTGGATGATTTGAAGGATAGCAAGGAAAGTCCAAGGGAGAGGCTGTCGAGTAAGACCTCGTCTGACCTGCGTGTGGCGAGAGTGACTTCATCGACAAGGGAAGAAGTGTATCGATCTAAAGATCAGCATGATGGTAATGATGCAAGAGTGATGTTGATTGACAAGCAAGTTAATGGGTCGGGTCGAATGCAGGGTGAGGATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGTAGAATTCCGAAGGCAGCCGAGGGAGACCACGTTGCTGCCGGGTGGCCTTCATGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGCTGGCTACCCCGACGAGCTGATTCTTTCGAGAAATTGGATAAAATTGGCCAAGGAACTTATAGTAATGTATATAGAGCTCGTGACCTTGACCAAAAGAAAATCGTTGCTTTGAAGAAAGTAAGGTTCGACAACTTAGAACCCGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTCGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTCACATCAAGGATGTCTTGCAGCCTTTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACACCCTGGCGTGAAGTTTACAGAGGCGCAGGTCAAGTGTTACATGCAGCAACTTTTACGGGGACTCGATCATTGTCACAGTCATGGAGTTCTACATCGTGACATAAAGGGCTCGAACCTTTTAATTGACAACAATGGCATCTTGAAAATTGCTGACTTTGGTTTAGCAAGTCTTTTTGATATCCACCAAAATCAGCCACTGACAAGTCGGGTTGTGACTCTTTGGTATCGACCGCCTGAGCTTTTACTTGGCGCTACTTATTATGGTATAGCTGTAGATTTATGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACGATATTTAAGCCCCAACAGCCCTATCGACGTTGTGTTGCAGACACGTTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACGTTACTCTCGGTAGATCCTGCTGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTCTTTTCAACAAAGCCTCTTCCTTGTGATTCTTCAAGCTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGACCTGCAAAGGAAAAATAGTGAGTCTCGAGCCGTCCCTGCACCTGATGCCAATGCCGAGTTAGCCTCATCAATGCAGAAACGACAAGGTCAGTTCAATTCAAAGAGCCGGAGTGAGAAGTTTAATCCACATCTAGAAGAAGCATCGGGTTTTCCTATCGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCTCGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACTCTGATGACGCTCCCAAAATTTCAACCGAGGCCGAATCGTTCGCAACTTCAGGACTAGTTGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGCAGGGAAAAGTCTGACTCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAAGAAACCTCAGAGTCGTCGATGCTACCGGGCCAGAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGGAGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCACTACTCTGGTCCATTACTGGTTCCCTCAAGCAACATGGACCAAATGTTCAAGGACCACGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCAAAGGCACGGAAGGTTCAAGCCGACGGGAAACAGATGTCAACAAATTCATTATTCGTCTCCGGTCATTAA 2349 45.89 MSQWALRGHSLSLTESCREAIMIISVEIFLYVASAVPECIKLIAYAFSLNFGRIWQDFGGLVPEFLLSFRVMGMLEEEDILVLDDLKDSKESPRERLSSKTSSDLRVARVTSSTREEVYRSKDQHDGNDARVMLIDKQVNGSGRMQGEDFERKREKMEHMGAQHPSMGRIPKAAEGDHVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASLFDIHQNQPLTSRVVTLWYRPPELLLGATYYGIAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSVDPADRGSAALALKSEFFSTKPLPCDSSSLPKYPPSKELDAKIRDEEARRQGAVGSKGHRLDLQRKNSESRAVPAPDANAELASSMQKRQGQFNSKSRSEKFNPHLEEASGFPIDPPRPSQGAERMDSLVRHPKKASHSGPLAQRAAWAKASKNSDDAPKISTEAESFATSGLVAARRSMLAEDCREKSDSSQGEVKKLIGRFPGSFKETSESSMLPGQKFSNHSIVGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSSNMDQMFKDHDRHIQEAVRRARLDKAKARKVQADGKQMSTNSLFVSGH 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1972196 1977500 + CmaCh16G003960.1 Cma16g00396 310994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00396 782 MobiDBLite consensus disorder prediction 555 571 - -
Cma16g00396 782 SUPERFAMILY Protein kinase-like (PK-like) 200 497 IPR011009 -
Cma16g00396 782 MobiDBLite consensus disorder prediction 679 711 - -
Cma16g00396 782 PANTHER CELL DIVISION PROTEIN KINASE 127 764 - -
Cma16g00396 782 ProSitePatterns Protein kinases ATP-binding region signature. 212 235 IPR017441 GO:0005524
Cma16g00396 782 Gene3D Phosphorylase Kinase; domain 1 193 288 - -
Cma16g00396 782 PANTHER CYCLIN-DEPENDENT KINASE 127 764 - -
Cma16g00396 782 Pfam Protein kinase domain 206 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00396 782 Gene3D Transferase(Phosphotransferase) domain 1 289 529 - -
Cma16g00396 782 ProSiteProfiles Protein kinase domain profile. 206 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00396 782 MobiDBLite consensus disorder prediction 679 697 - -
Cma16g00396 782 SMART serkin_6 206 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00396 782 MobiDBLite consensus disorder prediction 520 632 - -
Cma16g00396 782 MobiDBLite consensus disorder prediction 520 539 - -
Cma16g00396 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672|GO:0006468
Cma16g00396 782 CDD STKc_CDK9_like 206 490 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00549 Cma16g00396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00805 Cma-Chr1:4338905 Cma16g00396 Cma-Chr16:1972196 0 dispersed
Cma06g00891 Cma-Chr6:5663101 Cma16g00396 Cma-Chr16:1972196 0 dispersed
Cma16g00396 Cma-Chr16:1972196 Cma20g00202 Cma-Chr20:955550 0 dispersed
Cma16g00396 Cma-Chr16:1972196 Cma04g00549 Cma-Chr4:2787202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69189 PF00069 Pkinase 2.20E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00396 - - csv:101222182 1310.82