Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00399 ATGGCGATGGCTTCACCTCTGGCCGTCAATGGAGTCAAGTTGGCTACGACTTCTCTAGCTTATGTGGACACCAAGGCTGCAAACAATACGAAGGCTCTGATGGCGGAGCTTTCCCGCCAATTCTACGGCCTCCGATTGGTTTCCAGCCCCGCCGGTAGCATTGCCATCAAGGTTCACGACCACTCCATTCCCAAGGGACAACACACAATCTCTTTGTCACATTCCGGTGTTAAGAAGGAGAGAATGCTCGCGGAGGACACCTGCATGTTATCTTATGGTGGGTCAATCTTATATTCACCACCTCCAAAGCCATTTTCTCACAAGCTCCCGAACTGTTTGGATGGTAGACCTCTTTTTATGAAGGATCCTTTCGGGAGCATCAAAGGAATTTCAAGCAAAATTTCTGTGAAGGCTGGGGCTCAAGGTTTAAATAATGAAAACAAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACATACTCTTTCCATATGCTCGTGATAACGTTGGAAAGCATTTGATTTTAACGTATGAAACTGCAGAAACCCAAGATGACATTATGTTATTGCGTTCACAAGTTGAAGAAGATTTGAAAAAAGGTGTCGCTGAAGCTGTGCCCGTCCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTGCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAGCTGCCTTGAAACAATTGCAAGGTCACATATGGAGAACAGGATTTTCAGGGAATGAATTGGAGGGAATAGTTTTTGATGATGTGCCAGAGGCTCTTGAGAGATGGCATGCTTTGGGCATTAAGGTCTACATATACTCGAGCGGAAGCAGGTTGGCACAAAGGCTTATATTCGGAAAGACTAATTATGGTGATCTAAGAAAATACTTATCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGGAGTTATGTTGAGATTTCAGAGTCTCTTGGAGTTGATACACCATCAGAGATCCTGTTCATCACAGATGTCTATCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCCATCTCAATCCGACCAGGAAATGGTCCACTGCCTGATGATCATGGGTTCCAGACTGCCACTTCCTTCTCAGACATCACAGCTTGA 1188 44.87 MAMASPLAVNGVKLATTSLAYVDTKAANNTKALMAELSRQFYGLRLVSSPAGSIAIKVHDHSIPKGQHTISLSHSGVKKERMLAEDTCMLSYGGSILYSPPPKPFSHKLPNCLDGRPLFMKDPFGSIKGISSKISVKAGAQGLNNENKPLPRCIVLDIEGTTTPISFVTDILFPYARDNVGKHLILTYETAETQDDIMLLRSQVEEDLKKGVAEAVPVPPDNAGKEEVIAALVANVEAMIKADRKIAALKQLQGHIWRTGFSGNELEGIVFDDVPEALERWHALGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREIRSYVEISESLGVDTPSEILFITDVYQEAVAAKAAGLQVAISIRPGNGPLPDDHGFQTATSFSDITA 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1983033 1987548 - CmaCh16G003990.1 Cma16g00399 310997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00399 395 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 152 392 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cma16g00399 395 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 152 393 - -
Cma16g00399 395 SUPERFAMILY HAD-like 151 393 IPR036412 -
Cma16g00399 395 Gene3D - 165 260 - -
Cma16g00399 395 Gene3D - 26 120 IPR036409 -
Cma16g00399 395 Gene3D - 261 393 IPR023214 -
Cma16g00399 395 CDD HAD_EP 153 374 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cma16g00399 395 SFLD enolase-phosphatase 152 393 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cma16g00399 395 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 128 393 - -
Cma16g00399 395 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 7 121 - -
Cma16g00399 395 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 128 393 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cma16g00399 395 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 7 121 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00399 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - csv:101221712 613.224
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01212 Cma16g00399 CCT
Cma01g01212 Cma16g00399 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01212 Cma-Chr1:8779239 Cma16g00399 Cma-Chr16:1983033 2.34E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00399 Cma_Chr16 FPKM 0.643972 0.540832 5.44014 5.262041 26.150949 25.361183 27.389494 4.747593 4.692198 4.667033