Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00400 ATGGAAGATCGCAGAGAGCCATTGTTGGAGCTTGGATTCGAAGCAAAACAATGGAGATGGTGGAAGAGAGGGTTGGATATGGAGGAAGCAAAGCTTCAACTTCTATTTTCACTTCCATTGATTCTTACAAATGTATTCTATTACATGATATCTCTCGTCTCTGTTATGTTTGCTGGTCACCTTGGTGAGCTCGAGCTTGCTGCTGCTACTCTTGCTAGTACTCTGGCTAGCGTCACTGGCTTCGCTTTCATGCATATAAGAAATGGAGTATCCAACTATTATGAGGCACATAAGGCAGCAGATCTCAAGACGGGACTGAGCGGCGCACTCGAAACGCTTTGTGGGCAAGCATTTGGCAGGAAGCTTTATGGGAAGATGGGGTTGTATCTTCAAGGCTCTTGTATCTTATCATTCTTTTGTTCCATCATTGTTTCAGTGTTGTGGATTTACACCGAACGTATTCTAGTCTTGCTCCATCAAGAACCCGAGATTTCGAGGATATCTGCAACGTATATGAAGTTTCTCATCCCAGGATTATTTGCTTATGGCTTACTACAGAACATCCTGAGGTTTCTTCAGACACAATCTGTTGTCATGCCTTTGATTTTCTTCTCTGCAGTGCCAATGCTCGTCCACTTAGCGATTACATATGGTCTGGTTCACTGGACGCGTCTCGGTTTCAACGGAGCTCCATTGGCCACATCGATCTCGTTATGGATGTCATGCCTGATCTTAGCTATATATGTACTTAAAGCAAAGAAGTTTGAGAAATCTTGGCAGGGCTTTTCATCCGAAGCTTTTACCTATAGTCTTTCAAGCTTAAAACTAGCTCTTCCATCTGCAGCAATGGTGTGTTTGGAGTATTGGGCGGTCGAGATTATGGTCTTTTTAGCCGGGTTGATGCCGAACCCTGAAACAAGTACTTCACTGATAGCAATGTGTGACAACACGGAAACCATTGCTTACATGATCACTTGTGGTCTCAGCGCTACAGTAAGCTTATCCTGCCCCTTAGTTTTGAAAGTTCTCCTTCTCAAACAAATGGCATTTTGTAGCAGCACAAGGGTCTCAAATGAGTTGGGAGCAGGCAATCTTGACAGAGCCAGAACTGCCATGTTTGTGACTCTCAAGCTTGCTGTCCTCGTCCCTCTTCTAGTTGTTTTGGCACTTGCCTTTGGCCAAAGCACCTGGGCTAGCTTCTTCAGCAACAGCGTTACAATAACAGACAGTTTTTCTTCCATGGTGCCGTTGCTCGCTATCTCGATAACATTGGACTCGGTGCAAGGCGCCATATCAGGGGTGGCTAGAGGTTACGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACGTTCTACATTGTCGGTGTATCGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATTCTAAGGGTTTATGGATCGGATACATCTGTGGTCTCTCGTCGCAAACTGCTTGTCTTCTTTTGGTCGTTTTGTATGCAAAATCGATTGAAATGGATCGATCTGATAATAAAGTAAAAGATATAGCTCTTTTAGTTTAG 1548 43.99 MEDRREPLLELGFEAKQWRWWKRGLDMEEAKLQLLFSLPLILTNVFYYMISLVSVMFAGHLGELELAAATLASTLASVTGFAFMHIRNGVSNYYEAHKAADLKTGLSGALETLCGQAFGRKLYGKMGLYLQGSCILSFFCSIIVSVLWIYTERILVLLHQEPEISRISATYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLIFFSAVPMLVHLAITYGLVHWTRLGFNGAPLATSISLWMSCLILAIYVLKAKKFEKSWQGFSSEAFTYSLSSLKLALPSAAMVCLEYWAVEIMVFLAGLMPNPETSTSLIAMCDNTETIAYMITCGLSATVSLSCPLVLKVLLLKQMAFCSSTRVSNELGAGNLDRARTAMFVTLKLAVLVPLLVVLALAFGQSTWASFFSNSVTITDSFSSMVPLLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYIVGVSISILLGFKLRLYSKGLWIGYICGLSSQTACLLLVVLYAKSIEMDRSDNKVKDIALLV 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1988139 1991192 - CmaCh16G004000.1 Cma16g00400 310998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00400 515 PANTHER MULTIDRUG RESISTANCE PROTEIN 352 506 - -
Cma16g00400 515 PANTHER PROTEIN DETOXIFICATION 352 506 - -
Cma16g00400 515 PANTHER PROTEIN DETOXIFICATION 22 333 - -
Cma16g00400 515 CDD MATE_eukaryotic 29 494 IPR045069 GO:0042910|GO:1990961
Cma16g00400 515 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 333 - -
Cma16g00400 515 Pfam MatE 345 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma16g00400 515 Pfam MatE 39 91 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma16g00400 515 Pfam MatE 104 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00400 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - qsu:111992976 567.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00855 Cma-Chr9:4194180 Cma16g00400 Cma-Chr16:1988139 0 dispersed
Cma16g00400 Cma-Chr16:1988139 Cma11g00296 Cma-Chr11:1469380 3.95E-107 dispersed
Cma16g00400 Cma-Chr16:1988139 Cma16g00401 Cma-Chr16:1992877 2.33E-150 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00400 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.273021 0.0 0.0