Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00407 ATGCGAGTTTCATCGGGTTCAGTTTCGTCGTCATTGAAGCAGAGTGACAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAAAGGCTTGATGCCATATGCGAAAAAGAGTATAGTCGAAACCATGGCGATGTGAATGAGAATGGCAGTGGGTTGGGGATTGTGGAGGCTGACCTTGGGCTTCGGCGGAGCAGCCGTGTCCGTCGGGCCCCAGTCTTGCTCGATGCTTCCCCTATGCCAAAGAAGAAGCGGCTGAAGGTTCATGGGAATGAAACTTCGGGCATGAAAACGATTGCTAACTCTCTGCCTCAGTTGAGCGATGAATTGAACGATGAGAAGCCCGACAATTGGAGATCAAGGTTAAGATCAGGGAACAGAAATTTGGGGATTAGAGTGGAAAAAGGAACTCGGGCAAGCAGGAAAAGAAAACTTTTTGATGAAATTGTCGATGTGGAAGTAAAAAGTAGTGGAATGAGGAGGTTTGGAGTGACAAATGATCAAATTAACATAGAAAAAGAGGTGAAATCTCCTAAAATTAAGGATGGCTGTTGCAGGGAAGACATCTTGGATATTGATAATGAAGATGATGATGAGGAGGAGGATGAGGAGTGGGAGGAAGAAGAAGAAGTAGAAGAAGAAGGGGAGGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGAAGAAGGGGAAGAAGAAGAAGGGGAAGAAGAAGAAGAAGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGGGGAGGAGGAGGAGGAGGTGGTGGAGGGCAAGGAAGTCATGACTGCAAAGAATGAGAGAGAGGATGTTTTGCCTTTGAAAAATGAAATGGATGACAAAAATGTGAAAGCAGTGGATGATGTTATTCCTGAGGTTGTTGAAAAATTGGACAAAGAAACTTCGAGTTCTTTTCATGTAGATGAGGCTTGTAGCGTCGATCACAATGAAGAACCAGCCAATGTGGTGGAGAATTCAAACAACGGTGAGATACCGCTGGAAGAATTAACACAACTAAATGAAGGCATAAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAACAAATGAAGTGGTAGTTGGAAGGCGTTGTGATGAGAAAGCTATTGATTTGGGCAAGTTTACTGAGAAGTCTAGGCAACATAGTGGTGATTTAAATTTAAAGAAGTTTACAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCAAAGAAGTTAGTTCAGGATTCGGGTGAGAGTGAAAATGAAGCTTGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGCCTATTAGGTCCTATTAATGATCGTTATGGCATTGCTGGAATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAGTGCACTCGGTGTGGGAGACCTGGCGCAACCATCGGATGTCGTGTTGATCGATGCCCAAGAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGGAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCATGGAAATCAATATTTAGCTCGGATAAAGAGATTGAAGGCCAAGAAAATGAAACTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGTTGGAGAATTGCGGGGAGGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTGAGAATTGCACCTGTATATATTGGTGGCTCAAACTCAGAAGGAGAGAACTTATATCGTGGTTGGGAGTCTGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTCTTGTATCCTGAGCTTTTCGATCGCTTTGGGATTACACCTCCTAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGCAAAACACATGTTGTGCGAGCACTAATAGGTTCTTGTGCTCGTGGTGATAAACGAATTGCATATTTTGCTCGTAAAGGAGCTGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGGTTGGCACCTTGTCGCACAAGGCAGCAAGATCAAACCCATAATTCAGTTGTGTCTACATTACTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTCGTAGTTATTGGTGCAACAAATCGCCCTGAGGCAGTTGATCCTGCATTAAGGAGGCCTGGGAGGTTTGACCGTGAGATTTATTTTCCTTTGCCATCGGTTGAGGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGAGGGACCCTTGCTCCAGTGGATTGCAAGAAGGACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCAGCCATGAGCGCTTTGAAAAGAAATTTTCCTCTTAAAAAAGTTCTATCAGCTTCTGGGGAACAAGCTTTGAGAGATAACTGCCCTCCTCTTCCTTCCATTTTAGTGGAGGAGCGGGATTGGTTAGAAGCTCTATTATACTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCCTCTCCTCTTCCCTCCCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTCGTTTCCCTTTATCTTGATGAACGCATCAGCTTGCCGGCTAATCTTTTAAATGCTGCAACTTTAATTAAAAGTGTGATTGTTACTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCTTATGTTCACGATTTTCTTCAGGATGCTGATATTGCATATGAGATAGAGATAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGTTGGTTCTGGTGTTCTCAACAATGAAACAGGTAATGATAGTTCCAAGTTTGAAAGTGTAGGTCATCGTGGTGGCCCACCCACTACTATGGTAGAGTCACCATTCACCTTGGAAAATAAGTCTGGCTTCCGTATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCTTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGTAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATATCACAGATATTATTGAATTGCTCTAGCATGGGATTGTGCCTTTTGTTCATGCCAAGAATTGATTTGTGGGCTATTGAATCACAAAATCAAACATCTGAGGAGTGCGGTTTCTATCTGAATGAGGAACAGTACCCCAAGGATGGAACTATTGTCAAAGACGGTCTCCTTGGTGGAAGGGAAAACCGTAGTTATTCAGACCAAAGCAAATCAACCAAGAGGACCGGACTTCAAGACGAATCTCTCTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCTCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGTGGTTCTTCGGGAATGACTTGTCAATTTGTCGGCCAACTACTACAGAGCATTCAGTACCTAGATTCTCTGTGCAGATTGATGAAGGTTTTGACCATGACATGGTAATCAATCAGTCTGCTACAGAATTATCAAGGGACATACTGAAACTTCTTGTTCATTTGATTCACCAAAAGTCCCACACTAAAACATCTATTTGCACAAAGAACCAAATTTCTGTTATCCAAGATGAGAGTAATGCTGCAGATCAGCAAATAGATAAAGAAACTGCCAGCGAGCACACTGGAGAAAAGAAGTCCCCTGATGTGTCTTCTGTTAGAATTGTACCACTACCTGGCAGTAGAACCATGAGAGTGAAATCAAACTTGAGTTCAGTAATATCTACTTTTGGGTATCAAATTCTGCGATACCCCCATTTTGCCGAGCTTTGTTGGGTGACATCAAAATTGAAAGAAGGCCCCTCTGCAGATGTTAGTGGACCCTGGAAGGGATGGCCGTTCAATTCTTGTATCGTTCGCCCGATGAATGCTTTGGAGAAGGTAGCATCAAGCAGCACGAGTAATGGAAAATCTAAGGAAATTTCGGGTATGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCATTAAGGAAAGTCTCCTTTGATGTGCGATTGGTACTCGACCTCTTAGTCGAACAGATAAATGCAAAAATAAATTCTGGGAAAGACCGGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTATCTGGAAGATGTTGTTAATAGCTGGGTCTTCACTCTACACAGCTTGGAACAGGACTCGAAAAAAATTGAAACATCAACGAATCATGCTTCTGGTGGTAATGAGATTTTGTGTGAGAAAAACGAACCCATTATATCCAACGAGGGCTGCCTTACACATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGTTGATGAGGAAGAAGTTGTACGTATTGATTCCTTGGTAGATGGTGATTTGAATCAGTCTAATTCCCAGGATACAACATTCATATCAGGAGGACATGGAGATGGGAATTTCTGCAGTAAGTCAGTCTCCAACCAGTCCCATGACATTGCTGCTGACGACGACGACGACCAGTTAACTGATAATATTCCACTGAATGAGACGTCTGTTCTTGCACCGGATGATTTGGAGGACAATAGAAACGACACATCGGTCAAAGAGCCTTTAAATTTAGGAACGGAATCAGTTTTCGAGTTGGAAGATCATCATCATCATCAAAATTCAAGTGAGGTATGTGCTGATGAAATCCCTAGCTGCACAAAACCCTACAACTATAGTAATGGGTGTTGCACCTTAGAAAATGGTTGCAAATGTGATGGTTGTAAGCCCGACACAGACACGAATGATCGTGAAGTGAATGTTCACTCGTCTCCCAGCAGAAGTGACCTCTCAACTAGCTCTGCACAAGTATGTTCTATTCAGTGCTGCACTGGTTGTTTAAACATCCTCTACGGTGCAACACGAACCATTCTTCACAATGAACTTGGATCGAATTGGAATAATTGGACTGTGGAGGACGTTCATGACATTGTTGCAGCACTTTCAGTTGATCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTTGTGTATTTAACGATAGACGAAAGGCCTCAGACTCGAGAACTTGTGATTGCAAAAGTTGGAAAGACATGGTTTTTACGGCAGTGGAATGTATTTGTCACTGTGAGAAGGAAAGTTGGAGTGAAAAAGTAAGTCCCTCTCCTTGTTCTGAAATGGGGCTTGAACCAAACTTTATATTCAGAGATGGTGTATTGGTTAGCCAAGATCCCAATAGGAATGTTTCGTTTCACTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTGCAGAGTTGATAGTGATGGCAAATGAGCCTTTAAATGGATAA 5694 42.87 MRVSSGSVSSSLKQSDNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENGSGLGIVEADLGLRRSSRVRRAPVLLDASPMPKKKRLKVHGNETSGMKTIANSLPQLSDELNDEKPDNWRSRLRSGNRNLGIRVEKGTRASRKRKLFDEIVDVEVKSSGMRRFGVTNDQINIEKEVKSPKIKDGCCREDILDIDNEDDDEEEDEEWEEEEEVEEEGEEEEGEEEEEEEEGEEEEEEEEGEEEEGEEEEEGEEEEEEEEEEKEGEEEEEVVEGKEVMTAKNEREDVLPLKNEMDDKNVKAVDDVIPEVVEKLDKETSSSFHVDEACSVDHNEEPANVVENSNNGEIPLEELTQLNEGINEIHDVEAAVVSTNEVVVGRRCDEKAIDLGKFTEKSRQHSGDLNLKKFTDSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESENEACSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLYRGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVEGPLLQWIARRTAGFAGADLQALCTQAAMSALKRNFPLKKVLSASGEQALRDNCPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPSHLIPCLLQPLSTLLVSLYLDERISLPANLLNAATLIKSVIVTALDGRKIVTSCWWSYVHDFLQDADIAYEIEIKLQGSGVLLEDSTFVGSGVLNNETGNDSSKFESVGHRGGPPTTMVESPFTLENKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILLNCSSMGLCLLFMPRIDLWAIESQNQTSEECGFYLNEEQYPKDGTIVKDGLLGGRENRSYSDQSKSTKRTGLQDESLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRWFFGNDLSICRPTTTEHSVPRFSVQIDEGFDHDMVINQSATELSRDILKLLVHLIHQKSHTKTSICTKNQISVIQDESNAADQQIDKETASEHTGEKKSPDVSSVRIVPLPGSRTMRVKSNLSSVISTFGYQILRYPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCIVRPMNALEKVASSSTSNGKSKEISGMVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLDLLVEQINAKINSGKDRYQYFRLLSQVAYLEDVVNSWVFTLHSLEQDSKKIETSTNHASGGNEILCEKNEPIISNEGCLTHEIPEVSCQEPVDEEEVVRIDSLVDGDLNQSNSQDTTFISGGHGDGNFCSKSVSNQSHDIAADDDDDQLTDNIPLNETSVLAPDDLEDNRNDTSVKEPLNLGTESVFELEDHHHHQNSSEVCADEIPSCTKPYNYSNGCCTLENGCKCDGCKPDTDTNDREVNVHSSPSRSDLSTSSAQVCSIQCCTGCLNILYGATRTILHNELGSNWNNWTVEDVHDIVAALSVDLLAAVRRAFLDGNDTCVFNDRRKASDSRTCDCKSWKDMVFTAVECICHCEKESWSEKVSPSPCSEMGLEPNFIFRDGVLVSQDPNRNVSFHCKLETLCLCSLAELIVMANEPLNG 1897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2019010 2029219 + CmaCh16G004070.1 Cma16g00407 311005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00407 1897 MobiDBLite consensus disorder prediction 181 288 - -
Cma16g00407 1897 Pfam AAA+ lid domain 858 890 IPR041569 -
Cma16g00407 1897 Pfam PHD-like zinc-binding domain 492 571 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1633 1653 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1184 1205 - -
Cma16g00407 1897 Gene3D - 833 893 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 270 288 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1190 1205 - -
Cma16g00407 1897 Pfam ATPase family associated with various cellular activities (AAA) 697 832 IPR003959 GO:0005524|GO:0016887
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1330 1349 - -
Cma16g00407 1897 ProSiteProfiles Extended PHD (ePHD) domain profile. 451 571 IPR034732 -
Cma16g00407 1897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 659 890 IPR027417 -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1 17 - -
Cma16g00407 1897 CDD AAA 693 832 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1 30 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 443 457 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 1327 1355 - -
Cma16g00407 1897 Gene3D - 658 832 IPR027417 -
Cma16g00407 1897 ProSitePatterns AAA-protein family signature. 802 820 IPR003960 GO:0005524|GO:0016887
Cma16g00407 1897 Coils Coil 205 266 - -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 188 269 - -
Cma16g00407 1897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 573 IPR013083 -
Cma16g00407 1897 MobiDBLite consensus disorder prediction 435 460 - -
Cma16g00407 1897 PANTHER AAA DOMAIN-CONTAINING 58 1891 IPR045199 -
Cma16g00407 1897 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 58 1891 - -
Cma16g00407 1897 SMART AAA_5 693 834 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00407 - - - csv:101208571 2695.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00207 Cma-Chr8:1158670 Cma16g00407 Cma-Chr16:2019010 5.78E-81 dispersed
Cma16g00407 Cma-Chr16:2019010 Cma03g01216 Cma-Chr3:8075269 2.19E-41 dispersed
Cma16g00407 Cma-Chr16:2019010 Cma06g00387 Cma-Chr6:1793079 1.57E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00407 Cma_Chr16 FPKM 10.164279 10.943725 9.676826 9.795227 9.278571 9.083139 9.521242 14.56562 14.129394 15.306087