Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00410 ATGCGAGCTCTACTGCGATGTCGCGCCTCTAAATTCGAACATAGATCGCCATTTCTCGCTGGGTTTAGAACCATCGTCACCACTTGCAGAGCCGTAGTCTTGCCCCACTTTGGTGGTCCGGAGGTGCTCCAGCTCCGCTCTGACGTTGAGGTCCCCAACCTCAAGCCTGATGAAGTTCTTGTCCGCGCCCGCGCTGTTTCCATCAACCCACTTGATACTCGAATGCGATCGGGTTATGGTCGCTCAATCTTTGAACCACTTTTACCGGTCATTTTGGGCCGTGATATCAGTGGTGAAGTTGCGGCTGTTGGTTCTTCGGTTCGTTCAGTAAGTGTCGGAGAAGAAGTTTTTGGTGCTTTGCATCCAACTGCTGTGAGGGGTACTTACGCTGATTACGCAATACTTTCAGCAGATGAATTAAGTGCTAAGCCAGGATCATTTACACATGTGGAAGCCAGTGCCATTCCTTTTGCTGCACTTACTGCATGGCGGGCTCTAAAAAGTACTGCTAGAATCAAAGAGGGGCAACGGGTATTAGTAATTGGTGGAGGAGGAGCTGTAGGTTATGCTGCTGTTCAGATATCAGTTGCTTCAGGCTGCCATGTTGCAACTACTTGTGGAAGTCAAAGTATAGATAAATTGCTGGCAGCAGGTGCTGAGCAAGCAGTTGACTATACTACTGAGGGCATTGAATTCACAATGGAGGGGAAATTTGATGCCGTTTTGGATACAATTGGTGTGCCAGATACGGAAAGAATTGGCATCCATCTTTTGAATAGAGGTGGACACTATATGACACTTCAGGGCGAGGCTGCATCATTGACTGATAGATATGGGCTAGTTTTCGGGCTTCCTATTGCTACAAGCATACTGTTGCAGAAACAGTTACAGTACAGATGCTCTCATGGAATTGAGTACTGGTGGACGTACATGAGAGCGGATTCTGAAGGTTTAGACGAAATCAGGAGGCTATGTGAAGCTGGAAAGCTAAAGATACCGGTTGAGAAAACATTTCCAATCACACAAGTAATGGAGGCTCATGAGGCAAAGGATAAGAACACCATTCCAGGATGTGAAAATTTTAACTGCGCTGGAGATTTAGTTTGCAGCCTAAGAAAGCTTGATGGCCACTCCATTTCCCAGTGCCCACCCATGGACCCAATCAATGCCTCTCTTCAATCTTCTCCTTCAAGCGATGTGCCGCTCATTGATGAAGCTTTGGATCGTTTAGAGCTCTGTTGGTTCTTTGATAATCTCCTTACTTGGAGGAACCCCCGGATGTCTACCTCCCGTTCTGATCCTTGTCTTTCTAATGTTGCCCATCAGGTGTTTGATGAAAGTCCAAGTCCTGCTGCTAATCTCTGCTCATCTGATTTGGATGGGGATGTTTCGCTGCCAAATGGTGGTAGGGTACGTCGGAATCTGCTTCGAACACCGTCGTTACCGTCCCGTATGGATCTAGGAGGGGAGGGAATTCGAGAGAAAGGAAGTTGTTCTAGACCCTTGTTGGAGCATGATGTGCTTGTTGAAACTCCTGGTGATAATGTTTGCTCGTCTTCTTTGGATATGGATGTTTCGATTGGAAATGGTGGTGGTAAACAGAGGAGTCTCCTTCGAACACCATCGTTACAGTCCCGTGTGGACCGAGAGGAAGGAATTCGAGATAAAGGAAGTGGTTCTAAGCCATTATCAGAGCATGATGTTCTTGTAGAAACTCCTGCTGATAATGTTTGCTCATCTTCTTTGGATATGGATGTTTCGATTGGAAATGGTGGTCGTAAACATAGGAGTCTCCTTCGGACACCCTCGTTACCGTCCCATGTGGACCAAGAGGAAGGAATTCAAGAGAAAGGAAGTGGTTCTAGGCCATTATCAGAGCATGATGTTCTTGTAGAAAGTCCTGCTGATAATGCCTGCTTATCTGCTATGGATATCAATGTTTCCCTGGGATATGGTGGTGGTAAATGTCGGAGTCTACTCCGGATGCCTTCGTTACCATCCCGTGTGGAACGAGAACAAGGTATTCGAGAGAAAGGGAATGATTCCAAGCCATTAATAGAACATGTGTTGCTTCAAAAACCAGCCAAACCACCATATGTAGAGAGGAAAGAAGAAGGAACTCGCAGCAAAGAAAGTGGTAGCACTCGAAAGAGCAAATCCGCAAGGAAACCACGGAATGGCAATCTGCTAAGAACACCATCTTTGCCACCATTTATAGGCAGAGAAAAGGAATTTGGAGAGAAGGAAGCTGCTGCTAGAATCAGAAACTCCATTCAACCGAATCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGAAAAGAACTTCAGCCTCCCGACGTGTCGAATCCCGACAAACAGCGACAGAATGTGGCACCAATTTCTCATCCAAATGAGGAAAAGAAGAAGCCAAAGTGAGCTTGAATCAGAAGAATTGCAAGGGTTCAAGGACTTGGGATTCACATTTGACAAAAAGGATATAAACCCAACAGTGGTTGATATAATTCCAGGGTTGAGAGAGAAAAAAGAGGAAGAATTAGACAGTGAAAGAACAAGAAGACCTTATCTTTCTGAAGCTTGGATGCTCCAAAATCATCTCCTCCCTCCCATCCCAAAATGGGACAGTAGAAAATCTGCTGAAGACATGAAACAACAAATCAAGTTCTGGGCTAGAGCTGTTGCTTCCAATGTGCACTAA 2700 45.63 MRALLRCRASKFEHRSPFLAGFRTIVTTCRAVVLPHFGGPEVLQLRSDVEVPNLKPDEVLVRARAVSINPLDTRMRSGYGRSIFEPLLPVILGRDISGEVAAVGSSVRSVSVGEEVFGALHPTAVRGTYADYAILSADELSAKPGSFTHVEASAIPFAALTAWRALKSTARIKEGQRVLVIGGGGAVGYAAVQISVASGCHVATTCGSQSIDKLLAAGAEQAVDYTTEGIEFTMEGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVFGLPIATSILLQKQLQYRCSHGIEYWWTYMRADSEGLDEIRRLCEAGKLKIPVEKTFPITQVMEAHEAKDKNTIPGCENFNCAGDLVCSLRKLDGHSISQCPPMDPINASLQSSPSSDVPLIDEALDRLELCWFFDNLLTWRNPRMSTSRSDPCLSNVAHQVFDESPSPAANLCSSDLDGDVSLPNGGRVRRNLLRTPSLPSRMDLGGEGIREKGSCSRPLLEHDVLVETPGDNVCSSSLDMDVSIGNGGGKQRSLLRTPSLQSRVDREEGIRDKGSGSKPLSEHDVLVETPADNVCSSSLDMDVSIGNGGRKHRSLLRTPSLPSHVDQEEGIQEKGSGSRPLSEHDVLVESPADNACLSAMDINVSLGYGGGKCRSLLRMPSLPSRVEREQGIREKGNDSKPLIEHVLLQKPAKPPYVERKEEGTRSKESGSTRKSKSARKPRNGNLLRTPSLPPFIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILEKNFSLPTCRIPTNSDRMWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEELDSERTRRPYLSEAWMLQNHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNVH 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2037720 2046262 - CmaCh16G004100.1 Cma16g00410 311008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00410 899 MobiDBLite consensus disorder prediction 527 568 - -
Cma16g00410 899 Pfam Zinc-binding dehydrogenase 218 349 - -
Cma16g00410 899 SMART PKS_ER_names_mod 38 355 IPR020843 GO:0016491
Cma16g00410 899 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 338 IPR036291 -
Cma16g00410 899 MobiDBLite consensus disorder prediction 544 562 - -
Cma16g00410 899 MobiDBLite consensus disorder prediction 670 684 - -
Cma16g00410 899 Gene3D - 155 333 - -
Cma16g00410 899 MobiDBLite consensus disorder prediction 697 718 - -
Cma16g00410 899 Gene3D - 37 350 - -
Cma16g00410 899 Pfam Alcohol dehydrogenase GroES-like domain 56 118 IPR013154 -
Cma16g00410 899 MobiDBLite consensus disorder prediction 593 626 - -
Cma16g00410 899 MobiDBLite consensus disorder prediction 667 740 - -
Cma16g00410 899 SUPERFAMILY GroES-like 25 179 IPR011032 -
Cma16g00410 899 PANTHER PROTEIN AST1-RELATED 24 357 - -
Cma16g00410 899 PANTHER PROTEIN AST1-RELATED 24 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00410 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - mcha:111012857 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01331 Cma-Chr3:8562556 Cma16g00410 Cma-Chr16:2037720 9.10E-09 dispersed
Cma13g00586 Cma-Chr13:5839339 Cma16g00410 Cma-Chr16:2037720 1.59E-14 dispersed
Cma14g00202 Cma-Chr14:872300 Cma16g00410 Cma-Chr16:2037720 1.39E-11 dispersed
Cma16g00410 Cma-Chr16:2037720 Cma17g01282 Cma-Chr17:8661909 1.12E-28 dispersed
Cma18g00428 Cma-Chr18:2349691 Cma16g00410 Cma-Chr16:2037720 1.10E-06 dispersed
Cma19g01010 Cma-Chr19:8690809 Cma16g00410 Cma-Chr16:2037720 6.09E-14 dispersed
Cma16g00410 Cma-Chr16:2037720 Cma04g01730 Cma-Chr4:8700030 2.37E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00410 Cma_Chr16 FPKM 10.808703 11.80537 6.526271 6.314209 9.834578 10.784078 10.998165 7.791092 7.738394 7.861546